Protein Info for AZOBR_RS13995 in Azospirillum brasilense Sp245

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 signal peptide" amino acids 5 to 6 (2 residues), see Phobius details transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 38 to 52 (15 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 195 to 218 (24 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 291 to 312 (22 residues), see Phobius details PF03547: Mem_trans" amino acids 5 to 143 (139 residues), 46.9 bits, see alignment E=7.5e-17 amino acids 161 to 307 (147 residues), 67.6 bits, see alignment E=3.9e-23

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 79% identity to azl:AZL_024180)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AHR4 at UniProt or InterPro

Protein Sequence (315 amino acids)

>AZOBR_RS13995 transporter (Azospirillum brasilense Sp245)
MSVVFNVALPVFAIILAGVLSGKAKLLGPASSEALNKFVYWMALPPVLFLGTAKRSLSEI
FNGPFIGAFLGSMLAVYALGALLGWLIHRERTQIQCMQGLNACFSNTGYMGIPLFLAAFG
PDRLAPAILATVIMSAIMVGIAVIWLEFANSQGGGIGKALRDVGRALVKNPLIISTALGL
AWSVFLSGVPVPRPIAIYCDLMGASAGPCALFAIGLFLATQSLKANLLEVGWISALKLVV
QPALAWFLIQTLFPLDPFWAGSAIILAGLPTGALTFVVASQYRIYVERTSAAILMSTIAS
VVTLSFLLATYAPPL