Protein Info for AZOBR_RS12680 in Azospirillum brasilense Sp245

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF13395: HNH_4" amino acids 92 to 140 (49 residues), 22.8 bits, see alignment E=1.1e-08 PF14279: HNH_5" amino acids 92 to 143 (52 residues), 66.4 bits, see alignment E=2.5e-22 PF01844: HNH" amino acids 92 to 137 (46 residues), 63.5 bits, see alignment E=2.3e-21

Best Hits

KEGG orthology group: None (inferred from 91% identity to azl:AZL_025160)

Predicted SEED Role

"HNH endonuclease family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AFX2 at UniProt or InterPro

Protein Sequence (187 amino acids)

>AZOBR_RS12680 MFS transporter (Azospirillum brasilense Sp245)
LAPPPDHCPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVNIISEYDRVVRSPTFEVK
LPSVISLKEFIPATRRPAFTRFNVFLRDRFTCQYCGHHFPTQELTFDHVIPRSRGGRTTW
DNVVTSCSACNLAKGNRLPHSCGMIPLSPPFQPSAYQLQENGRAFPPNFLHESWRDFLYW
DTELDPI