Protein Info for AZOBR_RS10525 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF02622: DUF179" amino acids 20 to 178 (159 residues), 170.6 bits, see alignment E=1.3e-54

Best Hits

Swiss-Prot: 55% identical to Y4502_RHOP2: UPF0301 protein RPB_4502 (RPB_4502) from Rhodopseudomonas palustris (strain HaA2)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 84% identity to azl:AZL_015420)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AN14 at UniProt or InterPro

Protein Sequence (191 amino acids)

>AZOBR_RS10525 hypothetical protein (Azospirillum brasilense Sp245)
MPHLTKSSDYLTGQLLIAMPGMTDPRFQRTVIYMCAHNEDGAMGLVVNRLFGSVTFEDLL
EQLEIEIQEPIANMPVHYGGPVESGRGFVLHSTDYVRDGTLVVDDEVALTATIDILRAIS
EDRGPRRNILLLGYAGWGPGQLDAEIQANGWLNVPCDETLLFDPELDTKWERSIAKLGVS
LSMLSAEAGHA