Protein Info for AZOBR_RS10515 in Azospirillum brasilense Sp245

Annotation: alkyl hydroperoxide reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF08534: Redoxin" amino acids 4 to 157 (154 residues), 132.9 bits, see alignment E=8e-43 PF00578: AhpC-TSA" amino acids 5 to 139 (135 residues), 56.3 bits, see alignment E=3.2e-19

Best Hits

Swiss-Prot: 53% identical to PRX2C_ORYSJ: Peroxiredoxin-2C (PRXIIC) from Oryza sativa subsp. japonica

KEGG orthology group: None (inferred from 84% identity to azl:AZL_015390)

Predicted SEED Role

"Peroxiredoxin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AN12 at UniProt or InterPro

Protein Sequence (160 amino acids)

>AZOBR_RS10515 alkyl hydroperoxide reductase (Azospirillum brasilense Sp245)
MTIQVGDAIPSVTLKHLTDNGMQDVTTDALFKGKTVVLFSVPGAFTPTCSAKHLPGFVQK
AEDLKAKGVDDIVCLAVNDPFVMRAWGEKNGVGGKVTMLPDGNAALTQALGLTMDGTGYG
LGLRGQRFALVAKDGKVTHLAVEKPGQFEVSSAEAVLGAL