Protein Info for AZOBR_RS08370 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 6 to 39 (34 residues), see Phobius details amino acids 44 to 69 (26 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details amino acids 218 to 235 (18 residues), see Phobius details amino acids 241 to 265 (25 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details PF09991: DUF2232" amino acids 19 to 295 (277 residues), 42.3 bits, see alignment E=2.9e-15

Best Hits

KEGG orthology group: None (inferred from 68% identity to azl:AZL_016790)

Predicted SEED Role

"FIG003573: hypothetical protein" in subsystem CBSS-262719.3.peg.410

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ALL7 at UniProt or InterPro

Protein Sequence (318 amino acids)

>AZOBR_RS08370 membrane protein (Azospirillum brasilense Sp245)
MASPLAAPLAAAIGVGVVSAFFYLAVLFGGFGALILGYLAPLPLFLAGLWLGSTASLLAG
AVGTVAVLAVSSSVLVSLAYLVTAAVPVILVVRQALLARAAPDGSVEWYPPGRLLMALTG
MGLAGLLGAAVLTLDQPGGLEGAVRETLSRMADQMFSAQGQQAPDPQDIWMAEVLPGFAV
ISWLVMTIVNGALAQGVLMRFGRNRRPAMRLDDVELPRWLATAFLLTMVAASLASDPVGF
LAVNAALILSLPFAFAGLSVVHVFARRRSAKLPILIGFYMFLFLFGWPIVLMVGLGMIEQ
WIGLRRRLRPAGPDQEDE