Protein Info for AZOBR_RS07885 in Azospirillum brasilense Sp245

Annotation: spermidine/putrescine ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details amino acids 301 to 319 (19 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details TIGR04259: oxalate/formate antiporter" amino acids 16 to 419 (404 residues), 662.5 bits, see alignment E=1e-203 PF07690: MFS_1" amino acids 28 to 274 (247 residues), 88.6 bits, see alignment E=2e-29 amino acids 267 to 415 (149 residues), 46.5 bits, see alignment E=1.3e-16

Best Hits

KEGG orthology group: K08177, MFS transporter, OFA family, oxalate/formate antiporter (inferred from 82% identity to azl:AZL_a03370)

Predicted SEED Role

"oxalate/formate antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ALA4 at UniProt or InterPro

Protein Sequence (433 amino acids)

>AZOBR_RS07885 spermidine/putrescine ABC transporter substrate-binding protein (Azospirillum brasilense Sp245)
MHQALTEAPKGPLGGRWFQLVIGVICMSMIANLQYGWTLFVEPIDQKHGWGRAAIQVAFT
IFVVMETWLVPVEGWFVDKFGPRIVVLIGGVLCAAAWAVNSVADSLAMLYLGAALGGIGA
GGVYGTCVGNALKWFPDRRGLAAGLTAAGFGAGSALTVVPIANMIHSSGYEATFMTFGIG
QGAVILALAWFLASPKKGQVPEVTRSAVSQTRESYTPVQMLKTPVFWVMYAMFVMVAAGG
LMATAQLGPIAKDFHLDGVPVSIMGLTLPALTFALSIDRVLNGVTRPFFGWVSDHIGREN
TMFIAFALECVGILALNQWGHNPVAFVILTGLVFFAWGEIYSLFPALCGDSFGSKFATTN
AGLLYTAKGTASLVVPFANVAVASTGSWQAVFFFAAAVNGIAALLAIFVLKPMRARQINE
SLPASKLAAEPAQ