Protein Info for AZOBR_RS06580 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 54 to 77 (24 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 3 to 168 (166 residues), 209.9 bits, see alignment E=1.4e-66 PF03350: UPF0114" amino acids 10 to 126 (117 residues), 142.7 bits, see alignment E=3e-46

Best Hits

Swiss-Prot: 51% identical to Y4083_AZOVD: UPF0114 protein Avin_40830 (Avin_40830) from Azotobacter vinelandii (strain DJ / ATCC BAA-1303)

KEGG orthology group: None (inferred from 81% identity to azl:AZL_021630)

Predicted SEED Role

"Uncharacterized protein UPF0114"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AKG6 at UniProt or InterPro

Protein Sequence (180 amino acids)

>AZOBR_RS06580 hypothetical protein (Azospirillum brasilense Sp245)
MIERRFEQIIFASRWLLAPFYLGLVVSLVLLLAKFTQEIFHIVPHVLEMQEKDVLLAVLT
LIDLSLAGNLLLMVIFSGYENFVSKIDVADHKDRPDWMGKVDFGGLKLKLIASIVAISGI
HLLKSFMNIDNTSKENLMWMVIVHMTFVVSGVLLALMDRLEGSHHGAHGKAAAAAKSDHH