Protein Info for AZOBR_RS00175 in Azospirillum brasilense Sp245

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 194 to 218 (25 residues), see Phobius details PF00672: HAMP" amino acids 216 to 262 (47 residues), 37.8 bits, see alignment 2e-13 PF00015: MCPsignal" amino acids 387 to 492 (106 residues), 98.8 bits, see alignment E=3.2e-32

Best Hits

KEGG orthology group: None (inferred from 81% identity to azl:AZL_023030)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AE81 at UniProt or InterPro

Protein Sequence (565 amino acids)

>AZOBR_RS00175 methyl-accepting chemotaxis protein (Azospirillum brasilense Sp245)
MTFLNHLHIPTKMGIPAATAILGMLAIALLGGSAITEQSRLLDTLFNRSFTREADVQALT
DTLTVAHAGLYRTVILSTANASPKAVEDESKALTEQITKLKTQADKMKGQSAATEDEGQI
LQRFGSDTAAYQAKVTSFLDLLKMGVDPLDFLQEVQAAYGRLNGTARDYLTYQRQQSADA
YANVNASVDATTQAFIASAIVALLITVGVALFIGFNIARPVVRLTTVMERLAQGRLEDEV
PAAERGDEIGQMARTVRVFKENALRVQEMAREQEAMRARAMEEQRRAMNSLAADLEASVK
AMMGEVVRSADSMRGEANVMLENARQTSHHSDSVAHAVQEATSEVESVAAGAEQLRASID
EITRSITQSTQLARGAVDEAGRTDSIVQGLSEASRKIEEVVGLINNIAGQTNLLALNATI
EAARAGEAGKGFAVVAQEVKSLANQTAKATDEIGAEIAAVQAATTAAVNAIRAIVNTIRQ
VDESLSTVAAAVEEQDAATRDISERSQRAATDTVAVLQEMRLVQQAAETTGHSAGAVQTT
TEELSRSFNRLDNEIEAFITRITAA