Protein Info for AZOBR_RS00165 in Azospirillum brasilense Sp245

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 34 to 53 (20 residues), see Phobius details amino acids 64 to 85 (22 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 120 to 143 (24 residues), see Phobius details amino acids 156 to 182 (27 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 226 to 249 (24 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 287 to 307 (21 residues), see Phobius details PF03547: Mem_trans" amino acids 4 to 302 (299 residues), 102.2 bits, see alignment E=1.1e-33

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 59% identity to azl:AZL_023040)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AE79 at UniProt or InterPro

Protein Sequence (309 amino acids)

>AZOBR_RS00165 transporter (Azospirillum brasilense Sp245)
MTLIFQIVLPMFVLVALGFYAGKSGNFSNTAAQGLSRFLGIYALPALLFAAMAKAKIPDP
IEWGFVASFFVAAFIIFGLGAAWMLSIRRRDEAAIGGFAPSFSSIGLLGAPILMDAYGSS
VAIPVMLLILFQSPLLFTTATMIAEAQRTAGGRPVVAAVNAVKATLLSPMILSIVVGMGF
NLSGVHVPDAVMKAADYAAATVLPCACFTLGTSLSFGKLSGKFGQALVLAVMKTVLHPVL
TWVLAVEVFHLPPDWLAPAVTAAALPIGVNVYAFAERYQTGRELVSMSLLLSTLMSPISI
SVAFMVAMG