Protein Info for AO356_30010 in Pseudomonas fluorescens FW300-N2C3

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 PF00072: Response_reg" amino acids 7 to 116 (110 residues), 85.2 bits, see alignment E=3.5e-28 PF00196: GerE" amino acids 156 to 210 (55 residues), 70.3 bits, see alignment E=8.2e-24

Best Hits

Swiss-Prot: 44% identical to NARP_HAEIN: Nitrate/nitrite response regulator protein homolog (narP) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a2227)

Predicted SEED Role

"Nitrate/nitrite response regulator protein" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WQ95 at UniProt or InterPro

Protein Sequence (223 amino acids)

>AO356_30010 transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
MDCTTLLLIDDHPLFRKGLAQLFGASDDFEVVGQAASGREGINLAVSLAPQQVLLDLHMP
GLSGLQVLDELRQLRLDCQVVVLTASMDRAELLTALRLGASGYVLKETEPDALLDYMRNC
HKGAIVLDSTLIALLADQGESMPRPAYDSAPLDTGNLTEREGQTLALIAAGMSNKQIGRE
LGISDGTVKIYVRNLLQKLNLHSRLELAAWVHNGTSMRHEERH