Protein Info for AO356_29920 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3187 transmembrane" amino acids 1311 to 1325 (15 residues), see Phobius details PF00668: Condensation" amino acids 7 to 451 (445 residues), 238.2 bits, see alignment E=3.2e-74 amino acids 1086 to 1511 (426 residues), 162.4 bits, see alignment E=3.2e-51 amino acids 2155 to 2588 (434 residues), 182.5 bits, see alignment E=2.5e-57 PF00501: AMP-binding" amino acids 473 to 813 (341 residues), 262.3 bits, see alignment E=1.3e-81 amino acids 1531 to 1876 (346 residues), 280.9 bits, see alignment E=3e-87 amino acids 2608 to 2956 (349 residues), 303.8 bits, see alignment E=3.3e-94 TIGR01733: amino acid adenylation domain" amino acids 493 to 888 (396 residues), 427.5 bits, see alignment E=7.3e-132 amino acids 1555 to 1951 (397 residues), 440.6 bits, see alignment E=7.9e-136 amino acids 2629 to 3031 (403 residues), 434.1 bits, see alignment E=7.3e-134 PF00550: PP-binding" amino acids 970 to 1029 (60 residues), 45.3 bits, see alignment (E = 1.7e-15) amino acids 2040 to 2099 (60 residues), 45.4 bits, see alignment (E = 1.6e-15) amino acids 3118 to 3178 (61 residues), 47.7 bits, see alignment (E = 3.1e-16) PF13193: AMP-binding_C" amino acids 1935 to 2012 (78 residues), 41.9 bits, see alignment (E = 3.2e-14) amino acids 3015 to 3088 (74 residues), 39 bits, see alignment (E = 2.6e-13)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H388 at UniProt or InterPro

Protein Sequence (3187 amino acids)

>AO356_29920 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MIEPRCISLSSTQQSVWLDQLLSPDTPSYNIGVTVEIHGTVDHALFAAALRAVVAQFDAL
QLIISDRDGQVQQQVADHLQVPFTFHDWRGESEGRAMAAIEQLNRTPFSLRGQPLWGMEW
FQLSDTHALWNSRYHHLISDGTSVGLVGQAVSAAYNQLLVGEPLQLDPVLAQGYRSFVAS
DRDYLDSARHAKARDFWLEQFPALPEPLFQSASPSRDPASTSEPQPSAQAIWTLGHQRLA
LMTQWAKTQGATLSHCLSALLAGYFSRVTDQRERMVIGVPVHNRSNPLQKRTVGMFSSVL
PLTVEVDPAASFVETVQRVASQTLRSYRHQRYPLQSLHRELRARAGHPGQLFELMLSVEQ
YPGDVNLASARCALRTWHNGYERYPLAIYLRHYEAQVEPFLEFNYDPRLFSAEQMTTHLR
RLECLTDQVLAEPTRALGDWVLLDTAERQQVLDDFNASSRDYPADEPLPVLFAGQVQRRP
DACALLDGAQTLSYRQLDQRAEHLAGHLAACGIGAGDAVALCLARGAALIVSILAILKRG
ACYVPIDREAPTAHQARVLADCGSAWLLVAGDDRPALENVRFIDVAAPDHALAESHPARE
AGDVAYIMYTSGSTGTPKGVQVPHRAITRLVRNNGFAEFTAQDRFALAANPAFDASTLEI
WGALLNGGCLVVCPRETLLDAARFNEHLLHHEVSVLWLTAGLFHQYAEALAPAFGALRYL
MVGGDVLDPRRIEKVLRHSPPQHLLNGYGPTENTTFTTTHAITLADALAGDIPIGRPVGN
TQVYVLDEQRRPVPIGVAGELYVGGDGLALGYLNQPRLSEERFVANPFSQAPGARLYRTG
DLVRWRTDGVLLFLGRNDFQVKIRGFRIELGEIEAQLKALPGMSEALVLADAQQRLLAYF
SATEAQEPNALRARLAAVLPDYMLPAAFVQVDGFALTANGKLDRHALPEPDEQHFALHCY
EAPQGPVETRLAELWAEVLGVPRVGRQDNFFALGGHSLLAVQMVEQLRAEGWQLDVGTLF
SAANLLNLALLLENPLGPAKSQALPEAPAIAPDCRRITPAMLPLLNLPQSQVDLIVTAVE
GGAANVQDIYPLAPLQEGLLFQHLLQPTDDAYLLRATLAFDSRPLLDAFIAAFDQVIARH
DILRSAVLWEGLDEPVQVVWREAPLPVVWLAACDAFAEQPLDIRRAPLAQAYVRFDMPSG
QWQLQLVHHHLAIDHATLALLFGEVRTLMQDPEHPLPPTVAFRRFVAQAREHRRQASAEA
YFQRLLGTLDEPTLPYALHDIQGSGRDNREAQRSLDPALARRLRQLAKTQAVGVASLFHL
AWAMVVGKASGRDDVVFGTVLFGRFSAGQQVEQALGLFINTLPLRIDLDMPLYSALRQTH
GRLTELLAHEHAPLALAQRCTALPTQTALFSALLNFRHSQAQRSARPEFDLPGVRLLGSE
ERSNYPFCLSIDDLGEGFALTGQVHRSVCVDAVLAQMIRALEVVAQTLETAPATRACALD
ILPLEQRQQLLEGFNATRQAHPRDTLLHQPFERQAALHPDAVAAQFETVAGAQLSYAQLN
QQANQLAHALLMAGVRPDDRVAISLQRGPDLLVALLATLKAGAAYVPLDPNYPPARLAHM
LEDCAPRLVLSSQAVASGLPATAVECWRLDAAQLRDRLATLPAENPRIADLGPAHLAYVI
YTSGSTGLPKGVMIEHRNACNLLHWALRSFDAEEWRRSLFATSINFDLAVFECFVPLAAG
ATLHLVENALALVARPCPVSLINSVPSAVEELLRVGAVPDSTRVVNLAGEPLKPRLVEQL
FAHSTTQRVCNLYGPTETTTYSTWLSMDRAGGYRPGIGRPLDNTRVYLLDRHRQPVPLGV
AGEIYIGGAGVARGYLNRAELTQERFLSDPFVDDPQARMYRTGDLGRWRADGSLDYLGRN
DFQVKVRGFRIELGEIETQLLGMPAVREAVVLAQPGPAGDPRLVAYLIAQVSTTPVPDLA
EVRAYLESRLPDYMLPSACVALQELPLTPNGKLDRQALPLPEAQASSAARQAPQGDTERR
LAAIWTQVLGVSEISRDDDFFSLGGHSLLAVQLLEQLRRNGWDLDIRSVFERSTLAAQAL
RLENLASVPAPAPSVSAIPTPCARISPQMLDLVTLPQAQIDLIAARVPGGAGNIQDIYPL
GPLQEGMLYHHRAQREGDRYVLRSLLAFTDEARLQRFCAALGQVIGRHDALRTLVLWEDL
EEPVQVVLRQVAFTPRRLALEDDDIAARLQASADPRHYRLDLRQAPLIEARVAFDPAQER
WLLLLLHHHVVVDHTSLELMIEEIALIESGRPADLPPPTSTRALVAQARRPEAVAAARAF
FSEQLGDLDEPTLPFDLDLQTDPRWQALEHQQPLAPELARSLRRQAEAHGVSPASVCHLA
WALVLGRLSGRDDVVFGTVLFGRLQAGAHADRTLGLFINTLPLRVRLDGGVHAILRQVQD
TLNGLLCHEQTPLALAQRCSAVAPGTALFSALFNYRYSHAGQANVHQAMPGMTLLHSEER
THYPFNLAVDDLGEGFQLTAQTHPDHAPERLLGFMLTALHALVEALEQTDDGHIQSLDVL
PTAEQARLNRLNPVLSVSAPDGTLHGRFAEQAARRPDALALIDEHRQLSFRQLDEQANRL
AHHLLDQGVRPGQRVAVCLDREAHLAIALLAVWKAGCAYVPLDPDYPAPRLAFMLQDSAP
AALLTQERVREGLPTFDAGPLICLDAVGAAWQQAATDDPDIGTQPSDLAYLIYTSGSTGQ
PKGVMVEHRSVLNLWAGLHQRLADLPAGTRCSLNASVAFDASVQQLCQWLSGHCLVLIPK
RVRLDAAALLDYLQSQQVTLFDCTPTQLQALLKHRQTLALPQPLPRRLLLGGEAVPAELW
QQLAGEPGVRVLNVYGPTECTVDTTSAWLDQHPLPSLGQPLPNTQVHVLDHHDRRAPLGV
VGEIHIGGQGLARGYWQREALTRERFIADPFSLQPGTRLYRTGDLGRWELDGSLSYLGRT
DFQVKIHGHRIELGEIESHLLALPGVRQAVVVGRPDRHGVARLIAYLLGDAPPTPAQART
ALGERLPESMLPSAYVRLDSLPLTANGKLDRNALPEPDAQAYVQTRYEAPQGDIEIALAA
IWCELLNVERVSRHDNFFALGGHSLIAMGLVERMRQHHLRVDISQLFTAPTLAGLAAATT
PLKELLL