Protein Info for AO356_29380 in Pseudomonas fluorescens FW300-N2C3

Annotation: peptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 31 to 53 (23 residues), see Phobius details amino acids 100 to 125 (26 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 214 to 241 (28 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details PF12911: OppC_N" amino acids 26 to 69 (44 residues), 40.6 bits, see alignment 1.9e-14 PF00528: BPD_transp_1" amino acids 116 to 296 (181 residues), 81.7 bits, see alignment E=5.7e-27

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 98% identity to pba:PSEBR_a2194)

MetaCyc: 35% identical to putrescine ABC exporter membrane protein SapC (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-328 [EC: 7.6.2.16]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WYV0 at UniProt or InterPro

Protein Sequence (300 amino acids)

>AO356_29380 peptide ABC transporter permease (Pseudomonas fluorescens FW300-N2C3)
MSTPTTLAINDYLPPPSSLSRMLGKSFRHRGFAIGTVLLLIIFTGALFAPWLAPHDPYAQ
DVMLRMKPPAWMANGTWEYVLGTDKLGRDYLSRLLYGARISLFIGIAAALISGFIGTVMG
LLAGYYGGKVDAFISYLITTRLAMPVVMVALASASLMGGSLKVVIVLLGCLLWDRFAVVV
RASVQQIRDAEYVASAQALGCSTLRILVSEILPNLVGALIVVATLEMAHAILLESALSFL
GVGVQPPTPSWGLMIAEGKPYMFFSPWVIAIPGVALMILVLGINLVGDGLRDLILPDGRN