Protein Info for AO356_28875 in Pseudomonas fluorescens FW300-N2C3
Annotation: porin
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 38% identical to NICP_PSEPK: Porin-like protein NicP (nicP) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a2306)Predicted SEED Role
"Probable porin"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0N7H364 at UniProt or InterPro
Protein Sequence (417 amino acids)
>AO356_28875 porin (Pseudomonas fluorescens FW300-N2C3) MTILLTRGALFPILGLLPLATASAEGFIDDSKLKLQLRNVYFNENFRDEHGMSARAARTA KSERTEWAQGFLLDYQSGFTPGTLGFGVDALGLLGVKLDSGRGRSGTGLLPVHDDGRAAD EFASAGMTAKARLAKTTLKYGTLLPKTPVLVYNDARLLPQTYQGTQISSNDIDNLTVTGG HLERFKLRDSSDSMPIVPDGYGGDKSGDFSYAGADYKLGKHIRLSYFYGELENFYRQNFV GIQHDLPLGAGVLTSDLRYFNSVDSGSAYGGKIDNDMLSGSLSYAVVGHTLSAGYQTLSG EAGLPYVSGATVYSFSNVGIGKFIEEDEKTWMLGYGYDFARLGVPGLTFSTRYLSGNDGK SDTAVKEWERDAEIAYVVQQGTFKGLGVKLRNYVYRSDFSRGRDSNRVYFTYDIALW