Protein Info for AO356_26665 in Pseudomonas fluorescens FW300-N2C3

Annotation: carbon monoxide dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 999 PF01315: Ald_Xan_dh_C" amino acids 30 to 140 (111 residues), 91.6 bits, see alignment E=1.2e-29 PF02738: MoCoBD_1" amino acids 156 to 403 (248 residues), 234.4 bits, see alignment E=3.2e-73 PF20256: MoCoBD_2" amino acids 436 to 741 (306 residues), 240.4 bits, see alignment E=8.8e-75 PF10604: Polyketide_cyc2" amino acids 831 to 956 (126 residues), 40.2 bits, see alignment E=1.2e-13 PF06240: COXG" amino acids 835 to 973 (139 residues), 94 bits, see alignment E=2.2e-30 PF03364: Polyketide_cyc" amino acids 837 to 955 (119 residues), 27.9 bits, see alignment E=7.3e-10

Best Hits

KEGG orthology group: K03520, carbon-monoxide dehydrogenase large subunit [EC: 1.2.99.2] (inferred from 64% identity to bpy:Bphyt_2185)

Predicted SEED Role

"Carbon monoxide dehydrogenase large chain (EC 1.2.99.2)" in subsystem CO Dehydrogenase (EC 1.2.99.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.99.2

Use Curated BLAST to search for 1.2.99.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H311 at UniProt or InterPro

Protein Sequence (999 amino acids)

>AO356_26665 carbon monoxide dehydrogenase (Pseudomonas fluorescens FW300-N2C3)
MTSFQPATESQTGHIGARQTRVEDAALLRGLGCYADDAAIPPGTLHAAIIRSPHAHARIT
SVDFSSALLMKGVHGVLVGEDVKRWALPFPVGVRQPMEHWCVAVDKVRYVGEPVAVVIAE
SRYLAEDAIEGVRVEYEPLPPIIDPERATAEQAPILHEAVGSNVVNERRFRYGEPEQAFE
QAPHKVSLKVKFPRSSCTPIECYVVLAQYERATGIYDVLANFQGPYALHTVMARALNVPG
NRLRLRTPKDSGGSFGIKQGVFPYVVMMGLASRKVGAPVKWVEDRLEHLQGASSATNRVT
EIEAAVEADGRITALRYDQIDDCGAYLRAPEPATFYRMHGNLTGAYAIRNLQVRNRVVLT
NKTPSGLNRGFGGPQVYFALERLMQHIAVQLKLDPLDVIRRNLVPADAFPYRAAAGALLD
SGNYQAGIALAAADGGLDELLKRRDQARAEGRIYGIGYAAVIEPSISNMGYITTAMTPEE
RRKAGPKNGAVATATINVGPLGDVSVHVSSAPQGQGHQTTVAQVVAEVLGVALESIVVNV
ELDTQKDAWSIASGNYSSRFAGAVAGAVYKAALKIRDRLAAIAAEQLQASPEDIRFAGGK
IFVVNGGAVAPFHRIAGATHWSPGLLPEGESGGLRETAFWSPPQLVAPDDQDQVNSSLCY
GFVFDICGLEIDRMTGEIHIDRYVTCHDAGRLLNPALVDGQIRGGFTQGLGAALMEEFAY
GEDGSFLSGTFADYLVPTAPEAIEPVILHMETPSPFTPLGAKGVGEGNNMSTPVCIANAV
ADALGRSDIRLPLTPSKVRTLIGIDEPPRPAGMEPDEDLDAAPAGGPALRANDSVVIPAS
PQQVFDTLLDPQTLAAIIPGCHDLVLEGENRYRADVTVGVGMIRARFEAKVALSDLDPPH
SLRLSGSGSSSMGSAQGQAKVRFVELENGHTRLEYQYQVAVSGKVAAVGGRMLQGASKVI
IGQIFTRLSQRVSGQAISTSWWARLRASLGAMFGKGGAQ