Protein Info for AO356_23760 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 transmembrane" amino acids 83 to 100 (18 residues), see Phobius details PF02627: CMD" amino acids 24 to 106 (83 residues), 73.3 bits, see alignment E=6.4e-25 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 42 to 91 (50 residues), 62.5 bits, see alignment E=9.7e-22

Best Hits

Swiss-Prot: 66% identical to Y1053_HAEIN: Uncharacterized protein HI_1053 (HI_1053) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a2494)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X376 at UniProt or InterPro

Protein Sequence (115 amino acids)

>AO356_23760 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MFNNWSELLPTIQKAFGALGRSNPKMVKAYMALGEAASENNVLDAKTRELISIAIAVTTR
CDGCIAAHTDAAIKAGASREEVAAALATAISLNAGAAYIYSLRSLEAYDTLKKPA