Protein Info for AO356_17110 in Pseudomonas fluorescens FW300-N2C3

Annotation: methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 PF00590: TP_methylase" amino acids 14 to 213 (200 residues), 112 bits, see alignment E=2e-36 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase" amino acids 14 to 285 (272 residues), 300.5 bits, see alignment E=5.9e-94

Best Hits

Swiss-Prot: 76% identical to RSMI_PSEAE: Ribosomal RNA small subunit methyltransferase I (rsmI) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K07056, (no description) (inferred from 97% identity to pba:PSEBR_a4631)

Predicted SEED Role

"rRNA small subunit methyltransferase I" in subsystem Heat shock dnaK gene cluster extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJQ5 at UniProt or InterPro

Protein Sequence (290 amino acids)

>AO356_17110 methyltransferase (Pseudomonas fluorescens FW300-N2C3)
LTAPGALNSAAGSLYVVATPIGNLDDISARALKILQEVALIAAEDTRHSQRLLQHFGIST
PLAACHEHNERDEGSRFITRLLAGDNIALISDAGTPLISDPGYHLVRQARAVGISVVPVP
GACALIAALSAAGLPSDRFIFEGFLPAKAVGRRARLEAIKEEPRTLIFYEAPHRILECLQ
DMELVFGAERQALLARELTKTFETLKGLPLTELRAFVENDSNQQRGECVVLVAGWTPPQS
EDAVSGEAMRVLNLLLEEMPLKRAAALAAQITGERKNVLYQVALEKQKDQ