Protein Info for AO356_15120 in Pseudomonas fluorescens FW300-N2C3

Annotation: amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 132 to 153 (22 residues), see Phobius details amino acids 163 to 185 (23 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 248 to 266 (19 residues), see Phobius details amino acids 293 to 313 (21 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 365 to 390 (26 residues), see Phobius details amino acids 411 to 431 (21 residues), see Phobius details amino acids 437 to 455 (19 residues), see Phobius details PF00324: AA_permease" amino acids 22 to 460 (439 residues), 425.2 bits, see alignment E=3.3e-131 PF13520: AA_permease_2" amino acids 24 to 436 (413 residues), 144.4 bits, see alignment E=5e-46

Best Hits

Swiss-Prot: 63% identical to YBGF_BACSU: Uncharacterized amino acid permease YbgF (ybgF) from Bacillus subtilis (strain 168)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 98% identity to pba:PSEBR_a5001)

MetaCyc: 57% identical to CP4-6 prophage; S-methyl-L-methionine transporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-486

Predicted SEED Role

"S-methylmethionine permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WZL3 at UniProt or InterPro

Protein Sequence (476 amino acids)

>AO356_15120 amino acid transporter (Pseudomonas fluorescens FW300-N2C3)
MSITEQQTNTRTGFKQEMQTRHIVMLALGGVIGTGLFLTSGYTVNQAGPMGAVIAYIIGA
LMVYMVMMCLGELAVQMPETGSFSTYATRFLGPGTGYTVAWLYWLTWTVAIGSEFTAAGI
LMSRWFPDTPVWIWSALFAGVVFLTNVVSVRLFAETEFWLSLIKVLTVVVFLLIGGGAIL
GLLNIDQAHSIGLSNFTREGLFPTGFMPIAMTLLAVSFAFSGTELIGIAAGETKDPQRNV
PRAIRTTVLRLAVFFVGTIFVLATLLPREQAGLVESPFVTVFTYIGIPYSADIMNFVIIS
ALLSAANSGLYAASRMLWTLSDQGHLPKQFSALTRMGTPLNAIIVSMAGGAASLLSSVFA
ADTIYLALVSISGLAVVVVWMSIAASQIAFRRHYVANGGDIRDLKFRVRGYPWVPLGALV
CCSLACVGIAFDPEQRVALYFGLPFIAWCYFVYYITRKSRERRLSVALVAQPSDAF