Protein Info for AO356_06790 in Pseudomonas fluorescens FW300-N2C3

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 783 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07715: Plug" amino acids 48 to 155 (108 residues), 67.3 bits, see alignment E=1.6e-22 PF00593: TonB_dep_Rec" amino acids 259 to 747 (489 residues), 154.9 bits, see alignment E=6.6e-49

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a901)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WUI7 at UniProt or InterPro

Protein Sequence (783 amino acids)

>AO356_06790 TonB-dependent receptor (Pseudomonas fluorescens FW300-N2C3)
MPGLGYRLFLLGGLSMLPWPSVQAEQVAPSALTLDATTVTARRREEDPQQVPIPINVLYG
EQLDEAGLHRLQDIQQRVPGLVVSGHDARYAGFGLRGFGATAYNDGLEGSVGTYVDGVYQ
ARQGMAFTELMDIERIEVLRGPQGTLFGKNTTAGALNIITRQPTFQPEANLEASYGERGL
REYRGTVSGPLQDDVLAGRLNVFDSSTDGAVENLEDGARLGDADSHGLRGQLLWTPTADF
SARLIADYAEQNEAGNVLLVNHYSQQTRKRAQFLGYPLSEPDPYKRETRIDAPGHPQTLQ
NGVSLELNWDLDEAMRLTSITAYRDWDYRATRDSDSTALSVAQSETELGHRQFSQEWRLS
GTVGSSVDYVAGLYYLRQQLDREIDAEFGKDAAPWFVGDQLEQLQKLYGITFTDPKQVPA
MLLDGARQRYDGEQKGDSRALFGQLSWRPIDPLELTGGLRYSQERKDGWVSRDVSNLAPL
TGLPPVFQAGGQLLRDIALGGAYYREDSIKENNVSSLLSASYRFSDGVMGYVSWSRGYKA
GGINFDVVGPFTAPTFEPERATSLELGMKTRFWDERALLDLAVYQTDVDNYQALTYSPPT
SMFAPPLRDNLINVGKVRLRGIELDSAWQLTPRLTGRLGLAWSDARYRSFPNAPCPPASG
QWTCDLSGDRLYNAPEWNLSSGLDHTHPLPYGLEAYSGIDYSFRTGYSGTLEGGEGSYQP
SYGLTNLRLGLRSQDRAWEVEGWVRNVFDRNYITAVYSLLGAGDYGVMTGSERTLGTTVR
LRY