Protein Info for AO356_04065 in Pseudomonas fluorescens FW300-N2C3

Annotation: type I secretion target

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2855 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 2441 to 2461 (21 residues), see Phobius details PF17803: Cadherin_4" amino acids 313 to 390 (78 residues), 31.1 bits, see alignment (E = 7.1e-11) amino acids 566 to 636 (71 residues), 34.4 bits, see alignment (E = 6.5e-12) amino acids 812 to 882 (71 residues), 32.1 bits, see alignment (E = 3.5e-11) amino acids 1058 to 1128 (71 residues), 35.5 bits, see alignment (E = 2.9e-12) amino acids 1304 to 1388 (85 residues), 27.1 bits, see alignment (E = 1.2e-09) amino acids 1546 to 1628 (83 residues), 28.3 bits, see alignment (E = 5.1e-10) amino acids 1786 to 1868 (83 residues), 25.5 bits, see alignment (E = 3.8e-09) PF17963: Big_9" amino acids 324 to 429 (106 residues), 28.9 bits, see alignment (E = 4.4e-10) amino acids 574 to 675 (102 residues), 35.4 bits, see alignment (E = 4.2e-12) amino acids 820 to 921 (102 residues), 34.6 bits, see alignment (E = 7.5e-12) amino acids 1066 to 1167 (102 residues), 34 bits, see alignment (E = 1.2e-11) amino acids 1311 to 1422 (112 residues), 34.2 bits, see alignment (E = 1e-11) amino acids 1555 to 1662 (108 residues), 35.3 bits, see alignment (E = 4.7e-12) amino acids 1796 to 1902 (107 residues), 33.7 bits, see alignment (E = 1.5e-11) TIGR01965: VCBS repeat" amino acids 373 to 443 (71 residues), 32.1 bits, see alignment (E = 1.5e-11) amino acids 606 to 692 (87 residues), 32.5 bits, see alignment (E = 1.1e-11) amino acids 853 to 938 (86 residues), 32.2 bits, see alignment (E = 1.4e-11) amino acids 1099 to 1184 (86 residues), 33.2 bits, see alignment (E = 7.1e-12) amino acids 1369 to 1423 (55 residues), 17.2 bits, see alignment (E = 7e-07) amino acids 1484 to 1569 (86 residues), 27.2 bits, see alignment (E = 5.1e-10) amino acids 1609 to 1664 (56 residues), 16.1 bits, see alignment (E = 1.5e-06) amino acids 1724 to 1810 (87 residues), 29.3 bits, see alignment (E = 1.1e-10) amino acids 1965 to 2038 (74 residues), 20.3 bits, see alignment (E = 7.3e-08) PF13519: VWA_2" amino acids 2056 to 2167 (112 residues), 40.6 bits, see alignment (E = 8.9e-14) PF00353: HemolysinCabind" amino acids 2587 to 2615 (29 residues), 21.9 bits, see alignment (E = 3.5e-08) amino acids 2617 to 2651 (35 residues), 34.1 bits, see alignment (E = 5.4e-12) amino acids 2683 to 2713 (31 residues), 18.9 bits, see alignment (E = 3.1e-07) amino acids 2705 to 2739 (35 residues), 25.6 bits, see alignment (E = 2.4e-09) amino acids 2715 to 2740 (26 residues), 18.1 bits, see alignment (E = 5.6e-07) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 2750 to 2851 (102 residues), 65.7 bits, see alignment (E = 1e-21)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X523 at UniProt or InterPro

Protein Sequence (2855 amino acids)

>AO356_04065 type I secretion target (Pseudomonas fluorescens FW300-N2C3)
MAALIGIVSKVVGQVFAEAAGGLRRPLVEGDRLYAGEHLVTGAEGAVAVHLQNGQSLTLG
RESNLTLTPQLLANHAPHVDTPDTTPPSDAQLTDVQKLQQAIAAGADPTQTGEATAAGPE
GGNPGGVGGGHSFVLLEEVGGEVDPLIGFPTAGFNGIPEFPQLRLAGDPDNTGDDATPPV
TPEMPDNPVTLDGVNVEGGELTTNEANLADGSASNPGALVQNGTFTVSAPDGLSSLSIGG
INVISGGVPAGFPQTITSALGNTLTITGYDPTTGVVSYTYTLTDNETHPAGGGANNITEQ
FPVVAVDTDGDTATGTLDVNITDDVPQAIDDSHANTASETLVTLTGNVLPNDHQGADRIP
TGPDSGPIVGGTFTGTYGTLVLNPNGTYTYTLNTSDPQFVALHGGGSGTETFTYTLTDAD
GDTSTANLVLQVHNNDDPVVLVGLDAEGGELSLQEKNLSDGSSPDASALTQSGTFTVTAL
DGVQTLSVGGINVVTGGVAAGFPQSITTALGNTLTITGYNASTGVVSYSYTLLDNEAHPN
ANGANSVSEQFAVVATDDNGTTANGNLDVNIVDDLPKAVDDSNASTASETHLTLTGSVLT
NDTQGADHVASGPITPGTFTGTYGTLVLNADGSYTYTLNTADADFKGLHGGGNGSETFTY
TLTDADGDTSTANLVLQVHNNDDPVIITGLDTEGGELSLQEKNLSDGSSPDASALTQSGT
FTVTALDGVQTLSVGGINVVTGGVAAGFPQSITTALGNTLTITGYNASTGVVSYSYTLLD
NEAHPNASGANSVSEQFAVVATDDNGTTANGNLDVNIVDDLPKAVDDNNASTASETHLTL
TGSVLTNDTQGADQVASGPITPGTFTGTYGTLVLNADGSYTYTLNTADADFKGLHGGGNG
SETFTYTLTDADGDTSTANLVLQVHNNDDPVIITGLDTEGGELSLQEKNLSDGSSPDASA
LTQSGTFTVTALDGVQTLSVGGINVVVGGVAAGFPQSITTALGNTLTITGYNASTGVVSY
SYTLLDNEAHPNANGANSVSEQFAVVVTDDNGTTANGNLDVNIVDDLPKAVDDNNASTAS
ETHLTLTGSVLTNDTQGADQVASGPITPGTFTGTYGTLVLNADGSYTYTLNTADADFKSL
HGGGNGSETFTYTLTDADGDTSTANLVLQVHNNDDPVIITGLDTEGGELTVQEKNLSDGS
NPDASALTQSGTFTVTALDGVQTLSVGGINVVIGGVAAGFPQSITTALGNTLTITGFNAA
TGVVSYSYILLDNEAHPNANGANSVSEQFAVVVTDDNGTTANGNLDVNIVDDLPTAHADA
ASVDEGGTVSGNVLNNDEGGADGPAASGAVIGVRAGNDTSTPAIGGLNTQINGTYGYLTL
DANGNAVYHSNPNTVSAPGATDVFTYTVRDADGDESTTTITIDVHDICLVATPDHEISVY
EKALDLNQDGQDLAPGTVTGSTPNATSETASGSLVGSISGAVGAVTFALVGNATGAYGQL
SLQPDGSYTYTLTAPATTTPHANDGPNVLSESFTYQATDSLGNTVTSTIVIDIVDDVPKA
HADLASVEEGGTVNGNVLDNDVLGADGGTVIGVRAGSDTSNPAVGGLNSQINGTYGYLTL
DANGNAVYHSNPNTVGAPGATDVFTYTVRDADGDESTTTITIDVHESCLVATPEHEISVY
EKALDLNQDGQDLAPGTVTGSTPNATSETASGSLVGSISGAVGAVTFALVGNAAGAYGQL
SLHPDGSYTYTLTSPAATTPHANDGPNVLSESFTYQATDSLGNTVTSTIVIDIVDDVPKA
HCDVASVVEGGTVNGNVLDNDVLGADGGAVIGVRAGNDTSNPAIGGLNSQINGTYGYLTL
DANGNAVYHSNPDAVGAPGAIDVFTYTVRDADGDESTTTITIDVHNSCLVAETDHDVTVY
EKALDLTQDGQDLAPGTVTGSDPSATGETASGTLVGSVSGATGAVTFTLVGNASGAYGQL
LLHPDGSYTYTLTSPATTTPHANDGPNVLSENFTYQATDALGNSTTGSLVVSIVDDIPKA
VASERSVTAVEVDSNLLIVLDVSGSMKDDSGVPGLSRMDLAKQAISALLDKYDDMGDVKV
QLVTFSGSATDQSAVWVDVATAKTLIAALNAHGDTNYDAAVAMAKTAFATPGQLTGAQNI
GYFFSDGKPTLGEIGSADEVAWKAFLDANGIKNYAVGLGSGARNVNLDPLAYDGSTHTDT
NAVVVTDLNQLNSALSGTVQGAPVTGNLLGEGGSFGADGGFIKSLVVDGTTYSYDPAANG
GHGALTASGGLNHGSFNTATNTLSIATDHDGTLVVNLDTGAFTYTSQTATSTLITEHIGY
TVSDHDGDLASSNLVINVVPNSPPIAADDNIITNVLSGNIVIPGELLLGNDSDANGDPLT
ASPTSFNTGWVAKGADFTGSTGTASFTGNNVQSINLSRSAFVANTASMTAMLVVSGALGM
VSNNNANDEDRLNISLKQGETLTLDHNLSAGRIAMEYSLNGGPFIAINDGASFTAAADGN
YQIHVTNIANPGGGNSNTAENYQLTLTVDYAGAQDKTPDYHGSYTASDNHGGSDSAAVGI
SYQAGHTLTGTSGDDVLLAGNGDNILNAGDGNDVLSAGSGNNTLNGGAGNDLLYSGTGND
LLDGGTGNDTVSYAHATSAVTVNLGLLAAQNTLGAGTDTLSHIENLVGSNFNDTLTGDGA
SNRLDGGLGHDVLNGGGGDDLLIGGLGNNTLTGGSGADTFQWQAGNSGHDVITDFTPGID
KLDLSQLLQGENDSAASLDDYLHFSVSGSGASVITSIDVSAIAGATPNQTIDLAGVNLAS
HYGVAPGAGGIIGAADTATIINGMLNDHSLKVDTV