Protein Info for AO356_02350 in Pseudomonas fluorescens FW300-N2C3

Annotation: lytic transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 642 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF14718: SLT_L" amino acids 404 to 470 (67 residues), 68.8 bits, see alignment E=3.6e-23 PF01464: SLT" amino acids 486 to 595 (110 residues), 108.1 bits, see alignment E=2e-35

Best Hits

KEGG orthology group: K08309, soluble lytic murein transglycosylase [EC: 3.2.1.-] (inferred from 99% identity to pba:PSEBR_a1743)

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X467 at UniProt or InterPro

Protein Sequence (642 amino acids)

>AO356_02350 lytic transglycosylase (Pseudomonas fluorescens FW300-N2C3)
MRSRLFSVLSCLFVCATAVQSAQAVDISTQRQYYDEAKRALAKGDSGPYFRYSQALRDYP
LEPYLAYDELTARLKSASNAEIEKFLAEHGDLPQANWMKLRWLRWLTERGDWETFVKYYD
PKLNFTELDCLNAQYQLSHGLKAEGYANTEKLWLTGKSQPQACDALFGLWASQGQLTEQK
RWERAKLAAQARNYPLANSLVSGLTTLAPRGNLLVDVAQKPELLNQPSRFVPADEPMSDI
VSLGLRRLARQDPEKAMALLDGYASTMHFSRDEKVAIAREIGLTLAKRFDSRALDVMTKY
DPELRDDTVSEWRLRLLLRLARWDDAYQLTRRLPESLSSTNRWRYWQARTLELAQPQNPE
ALTLYKHLARERDFYGFLAADRSQSPYSLVNKPLVMSQALINKVRNTPGVRRALEFHARG
DIVDGRREWYHVSRHFNRDEMVAQAKLAYDLKWYFPAIRTISQAKYWDDLDIRFPMAHRE
TLVREAKIRGLHPSWAFAITRQESAFMDDARSSVGAAGLMQLMPGTAKETARKFSIPLAS
PQQVLNPDKNIQLGAAYLSQVHSQFNGNRVLASAAYNAGPGRVRQWLRGADHLSFDVWVE
SIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERYFDDQ