Protein Info for AO356_01975 in Pseudomonas fluorescens FW300-N2C3

Annotation: capsid protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 TIGR01551: phage major capsid protein, P2 family" amino acids 6 to 335 (330 residues), 420.8 bits, see alignment E=1.8e-130 PF05125: Phage_cap_P2" amino acids 9 to 334 (326 residues), 476.4 bits, see alignment E=2.3e-147

Best Hits

Swiss-Prot: 52% identical to CAPSD_BPP2: Capsid proteins (N) from Escherichia phage P2

KEGG orthology group: None (inferred from 69% identity to xcc:XCC2972)

Predicted SEED Role

"Phage major capsid protein" in subsystem Phage capsid proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WTL8 at UniProt or InterPro

Protein Sequence (339 amino acids)

>AO356_01975 capsid protein (Pseudomonas fluorescens FW300-N2C3)
MRNDTREHFNAYLSQLARLNGVSSTTATFSVDPTVQQTLETRMQESSEFLGKIGIIGVDE
LQGEKVGLGVSSTIAGRTDTTGNGVRQPRDVSSLDKKGYEAKKTDFDTAIRYAQLDAWAK
FPDFQARLRDAILKRQALDRIMIGFNGVSAAATTDRQVNALLQDVNIGWLEQYRLNAPAR
VLKEGKTAGKIIIGSGATADYNNLDALVFDAVANLIDPWHRKDPGIVVILGSNLVHDKYF
PLINKEQPASEKLATDMILSQKRMGGKQPVEVPYVPDGAALVTTLANLAIYWQIGGRRRY
VKEAPEKNRIENYESSNDAYVVEDYGLGCLIENIELEEA