Protein Info for AO356_01125 in Pseudomonas fluorescens FW300-N2C3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 823 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 244 to 265 (22 residues), see Phobius details amino acids 285 to 311 (27 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 390 to 407 (18 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details amino acids 461 to 483 (23 residues), see Phobius details amino acids 687 to 710 (24 residues), see Phobius details amino acids 741 to 764 (24 residues), see Phobius details amino acids 784 to 808 (25 residues), see Phobius details PF02687: FtsX" amino acids 245 to 368 (124 residues), 36.2 bits, see alignment E=5.4e-13 amino acids 695 to 812 (118 residues), 57.8 bits, see alignment E=1.1e-19 PF12704: MacB_PCD" amino acids 464 to 633 (170 residues), 44.4 bits, see alignment E=2.5e-15

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 94% identity to pba:PSEBR_a3744)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WKQ9 at UniProt or InterPro

Protein Sequence (823 amino acids)

>AO356_01125 ABC transporter permease (Pseudomonas fluorescens FW300-N2C3)
VMIFRQTLKALLSHWRQHPVQFFSVLTGLWLATSLLTGVQALNSQARDSYARASQLIGGE
PQASLNAPGGGTFPQQWFIDLRRQGWPVSPVLQARVLLERHEDQRLQLMGIDPVSLPPGA
ALAGQARDMSEVVEFFTDPGRTWVAPQTLQALGLGEGDRPRTVDGQPLPPLHVQVDMAPG
VLLMDIGFAQAVLGLPDQLSRLLLPATFNAALPEAFRDRLQLTRADEENNLSRLTESFHL
NLDALGFLSFVVGLFIVHAAIGLALEQRRSLLRTLRACGVSVRVLLTSLAIELGVLALLG
GIAGVLSGYWLAGLLLPDVAASLRGLYGAEVAGHLNLSLGWWLSGVGLSLLGALLAGADS
LLRAARLPLLALANPQAWHQAHGRWLRRQGWVATGAGLIAASALVWGDSLASGFVLMTAL
LLGAALALPVLLSSALKQLLRRIRSVLGQWFLADCRQQLPTLSLALMALLLALAANIGAG
SMTAGFRQTFSNWLEQRLTAELYINPQTPAQAVELHAWLKQQPAITAVVPLWQVSIPLQG
WPTDIHGIIDHPHYRQHWPLLESAGDKPWEQLAAADTLMLSEQLARRLKVRIGDQLTLPT
PQGPWALRIVGIYADYGNPKGHVLVNADHLLAHWPQLTPNRFNLRIEPPAIPALLTALQG
RFSLDDSRIVDQARLKGWSSQVFERTFAATAALNSLTLAVAGVALFISLLTQSQSRLGQL
APLWALGVTRRQLMLLNLGQTWLLALLTLVLALPLGIALAWCLDAVINVQAFGWRLPLRV
FPLQLVQLLALAMLATLLASAWPLYALYRTQPADLLRTFAHED