Protein Info for AO356_01045 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1228 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF04357: TamB" amino acids 903 to 1228 (326 residues), 193.2 bits, see alignment E=4.3e-61

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 94% identity to pba:PSEBR_a3726)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W2J8 at UniProt or InterPro

Protein Sequence (1228 amino acids)

>AO356_01045 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
VKRGVKITLLALVGGLLAVVLALSTVLGTAFGSRWALGLVPGLAVENFQGRLGGQWSADH
LLWQQGDSRVALDRVIFAWSPLCLARMTLCIEQLKADQVALQLPASTDAPSSGPISLPDL
DLPLAIELGDVQVGSLSFNGSEQLKGLQLAAHWTAEGLQIDSVQLQRDELGLKLSGLLKP
GGDWPLNAEGRLTLPAPGATPWALDLKVDGNLLKTLNLKADSSGYLQGQLTGELQPLADN
LPAKVRITADGFKASADLPDTLLLNQLELTGEGDLKKGYQLLGKATLPAEKGPVALLLQG
TVDANGARIAGLDLDAGNQQSLKLSGQVDWRDGLSAEAKVAWLDFPWHRLYPLIDEPQVT
LRSFNGEVSYTDGNYLGNFQAALDGPAGAFSLDSPFSGNLTQIHLPQLKLAAGQGKAEGH
LSLQFADGIAWDTALQLSAINPAYWLGELPGILAGPLRSKGAMKNDRLELDADLDLKGKL
RGQPALFQAKASGAGEQWNLSALDIRLGDNRINGTGSLQQKLTGQIDIKLARLAQLWPQL
RGQVVGRVDVAGTLKAPQGKLGLQGTQLALQDNRLQSLNLDATLDRAQRGKLDLKASGIR
AGETSLGALTVSGQGDIKRQTLNLDLQGPQLDTTLALDGALDQGNWRGRLASGEVQAGGQ
AWRLQAPAKLERLTDGTLNVGAHCWRSGEASLCGEDQRLMPEPKLRYHLKQFPIESLAQW
MPKDFAWQGRLNADLQLDLPASGPNGRILVDASGGTLRIRDKAGDKAQWLDFPYQTLTLN
SRLTPKRIDTDLNFVGAKLGELVLQAQINPLPASKPLSGSFRLTGLDLSVARPFVPMVEA
LTGHLNGSGTLSGGLLAPQVNGNLVLSDGEVSGPELPISLEALQVRAMIAGETVRLDGAW
KSGKRGQGSLTGNIGWGEALTLNLALKGSQLPVTVEPYAVLDVAPDLNITMQGEQLSIAG
KVLVPKGEITVRELPPSTVKVSDDTVIVGHQTEEGKAPIAMAMDIDVIVGQDKLAFSGFG
LTANVQGQVHIGDNMDTRGELWLNDGRYRAYGQRLTVRRARLLFAGPIDQPYLDIEAIRQ
TDDVIAGIRLSGSAEQPTTQIFSEPAMSQEQALSYLVLGRPLSTTGEDNNMLAQAALGLG
LMGSSGVTSSLANNLGIDDFQLDTQGSGNTTSVVASGNLSEKLSLRYGVGVFEPANTIAL
RYKLSKKVYLEAASGVASSLDIFYKRDF