Protein Info for AO353_29035 in Pseudomonas fluorescens FW300-N2E3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 152 to 175 (24 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 255 to 276 (22 residues), see Phobius details amino acids 293 to 313 (21 residues), see Phobius details amino acids 321 to 337 (17 residues), see Phobius details amino acids 343 to 364 (22 residues), see Phobius details amino acids 375 to 398 (24 residues), see Phobius details amino acids 410 to 429 (20 residues), see Phobius details PF07690: MFS_1" amino acids 33 to 395 (363 residues), 170.1 bits, see alignment E=3.4e-54

Best Hits

KEGG orthology group: None (inferred from 87% identity to pfs:PFLU4260)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJD7 at UniProt or InterPro

Protein Sequence (450 amino acids)

>AO353_29035 MFS transporter (Pseudomonas fluorescens FW300-N2E3)
VSNSSAAPAVSPDNPVLARAISKVKSHVLPLFVIMFIVNYIDRVNIGFVRTHMEHDLGIG
AAAYGLGAGLFFIGYALFEVPSNILLQKVGARFWLTRIMFTWGITATLMAFIQNETHFYI
LRFLLGVAEAGFFPGVIYYFTRWLPGVERGKAIAIFLSGSAFASLISGPLSGMLLQINGL
GMHGWQWMYIIEGMASVFLCFFVWFWLDSKPHDAKWLSREEQDALVGEIDREQRERDAAH
TVKPTLGKLLKDRQIMLFCALYFCIQLTIYAATFWLPSIIKKMGDLSDIQVGFYNSIPWL
ISIVAMYAFAALSGKFKFQQAWVAAALLIAAAGMFLSTTGGPIFAFIAICFAAIGFKSAS
SLFWPIPQGYLDARIAAAVIALINSIGNLGGFVAPTTFGFLEQTTGSIQGGLYGLAGTSI
IAALLVFFAKTKPTVTDTANTDIHQPVLGK