Protein Info for AO353_27255 in Pseudomonas fluorescens FW300-N2E3

Annotation: late control protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF05954: Phage_GPD" amino acids 89 to 312 (224 residues), 53.3 bits, see alignment E=1.3e-18

Best Hits

KEGG orthology group: K06905, (no description) (inferred from 79% identity to pfl:PFL_2017)

Predicted SEED Role

"FIG032563: Phage tail protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W004 at UniProt or InterPro

Protein Sequence (348 amino acids)

>AO353_27255 late control protein (Pseudomonas fluorescens FW300-N2E3)
MTPTFRIVADGADVTALINDRLLLLRTSDKPGMDSDEFELRIDDRDGQVQLPRRGSSIEV
YLGYAETSLARLGRYTVDTVEVSGPPDTIVIKGKASDMRGSGKTIRSGSWEDVPLSKIVA
DVAARNGWQPVCPVTTKVARVDQLSESDFNFITRLAKQYDCTAKVADGKLLVMPRQGGQT
ASGKAFGAITLTRSDLSRWQFSLGDRNSHKAVATKHQNKKDGKLAVVTVNNDDAPAGLPA
VHTDRHIYPNKTAAESAAKARLAAFNRSTADVRLEMPGRTDIFAERPINAQGFKVGLDGE
YLADSVEQVFTQAGWSTTVECNAGKQGKSKGKKKKETKPLKVVSVEKL