Protein Info for AO353_25525 in Pseudomonas fluorescens FW300-N2E3
Annotation: sugar ABC transporter
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 72% identical to FBPC_PSEPF: Fe(3+) ions import ATP-binding protein FbpC (fbpC) from Pseudomonas fluorescens (strain Pf0-1)
KEGG orthology group: K02010, iron(III) transport system ATP-binding protein [EC: 3.6.3.30] (inferred from 72% identity to pfo:Pfl01_2839)Predicted SEED Role
"Ferric iron ABC transporter, ATP-binding protein" in subsystem Iron acquisition in Vibrio or Transport of Iron
Isozymes
Compare fitness of predicted isozymes for: 3.6.3.30
Use Curated BLAST to search for 3.6.3.30
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0N9VUG0 at UniProt or InterPro
Protein Sequence (368 amino acids)
>AO353_25525 sugar ABC transporter (Pseudomonas fluorescens FW300-N2E3) MNALELNSIYKTFGALPALDNVSLSVPAGSRTAIVGPSGSGKTTLLRMIAGFEFPDSGSI TLNGQTLVDGSTEVPAHQRMIGYVPQDGALFPHMTVAGNIAFGLSGDAALKQARVAELMD MVSLDARMSQRWPHELSGGQQQRVALARALAQRPRLMLLDEPFSALDTGLRASMRKMVAK LLSDTGVTTILVTHDQSEALSFADQLAVMRQGRLVQTGQPMDLYLHPRDEETALFLGDAV VMPAQIENGYAICDLGRVHVSSTSPNGAAQIMLRPEQLQISSQPADLEQVDGCIGVVTDR DFGGNTCTLTVELKQPSPATDGQSASRSLLVRSSGVHAPAAGSLVHISTLGSAHVLTEPA RRQAVATP