Protein Info for AO353_19910 in Pseudomonas fluorescens FW300-N2E3

Annotation: glycosyl hydrolase family 18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF16576: HlyD_D23" amino acids 61 to 182 (122 residues), 30.8 bits, see alignment E=3.7e-11 PF13533: Biotin_lipoyl_2" amino acids 62 to 106 (45 residues), 31.9 bits, see alignment 1.8e-11

Best Hits

KEGG orthology group: K02005, HlyD family secretion protein (inferred from 49% identity to cte:CT0553)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WLP4 at UniProt or InterPro

Protein Sequence (295 amino acids)

>AO353_19910 glycosyl hydrolase family 18 (Pseudomonas fluorescens FW300-N2E3)
MKNRVLFVLAVIGVLAGVTAAYLLGRTPRPLPPAFAPASSTYDTAIYANGIIESEQPGGS
NIVIYPQVSGPITQVLVQEGQAVTRGTPLVTIDDAVPRANFELAQASLKTAQDQYTKRLA
SYGIDPKSISKDTLDTAKDTAAQAQAALKAANATLAQYAIKAPVDGVVLAINTTVGSYVS
PQGAYDPYIQQFSPLLVMSAEQTYLAVRCYVDEILIARLPTPEHIRAQMLIHGSDIKVPL
EFVRVQPYVSPKIQLSNQRQEKVDLRVLPVVFRFEKKDLPMVYPGQLVDVFIGQK