Protein Info for AO353_17695 in Pseudomonas fluorescens FW300-N2E3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 66 (20 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 252 to 269 (18 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 306 to 331 (26 residues), see Phobius details amino acids 339 to 363 (25 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details TIGR00710: drug resistance transporter, Bcr/CflA subfamily" amino acids 15 to 387 (373 residues), 264.5 bits, see alignment E=1.1e-82 PF07690: MFS_1" amino acids 25 to 356 (332 residues), 162.4 bits, see alignment E=2.2e-51 PF06609: TRI12" amino acids 32 to 184 (153 residues), 35.8 bits, see alignment E=5.2e-13 PF00083: Sugar_tr" amino acids 44 to 378 (335 residues), 37.1 bits, see alignment E=2.7e-13

Best Hits

KEGG orthology group: K07552, MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein (inferred from 58% identity to bte:BTH_II1915)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJW1 at UniProt or InterPro

Protein Sequence (405 amino acids)

>AO353_17695 MFS transporter (Pseudomonas fluorescens FW300-N2E3)
MPVKSNLAPWIWSALLLVVVCLPRVTIDIYLPSLPAMADALRASDAQLQLTLTLYMVGYA
FSMLIGGPLCDHFGRRPVLIGGTALYLMATLMCALARDVEVLIVARMLQALGGCCGTVIG
RVMVRDRFDRHEQTRLLSRISMGMAISPMVAPMIGSLIETAFGWRGVFAILSVIAALTLT
LISLLLPETRPSAQPDTRQQGTLRIYARLLRDRYFLRYSLAIGCVYCTYFPFIAESSTLL
QRTLRLSSMEYAQVFAVTVAGYVLGSNLFRRLSVRHDADTLISYAIALNLVGSLLLTMAT
RLWPEALLSIVCPMLLIMLSVGIAIPACQLAVLQPFSAIAGTASGLFFFIQMAMTAVCGF
VTGKLSDGSVYPMMIMTSIFSISFCLVWLLFKTETAPQEEALGER