Protein Info for AO353_04285 in Pseudomonas fluorescens FW300-N2E3

Annotation: spermidine/putrescine ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 80 to 102 (23 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 91 to 259 (169 residues), 43.1 bits, see alignment E=2e-15

Best Hits

Swiss-Prot: 78% identical to YDCV_ECOLI: Inner membrane ABC transporter permease protein YdcV (ydcV) from Escherichia coli (strain K12)

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 94% identity to pfs:PFLU1210)

MetaCyc: 78% identical to putative ABC transporter membrane subunit YdcV (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VKD5 at UniProt or InterPro

Protein Sequence (280 amino acids)

>AO353_04285 spermidine/putrescine ABC transporter permease (Pseudomonas fluorescens FW300-N2E3)
MRSDAKKREPGIRGEQASLGLRIAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPQGFTL
KWFSVAFARPDVLGAIKLSAQIAAIATLIAMVLGTLASAALYRREFFGKQGISLMLILPI
ALPGIITGIALLATFKTLGIEPGMFTIIVGHATFCVVIVYNNVIARLRRTSYSLIEASMD
LGADGWQTFRYIVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLSRP
RDVPVTNVVAMLVMLVTMLPILGAYYLTRGGESVAGSGGK