Protein Info for AO353_04145 in Pseudomonas fluorescens FW300-N2E3

Annotation: dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 702 PF04879: Molybdop_Fe4S4" amino acids 9 to 61 (53 residues), 25.3 bits, see alignment 1.9e-09 PF00384: Molybdopterin" amino acids 65 to 482 (418 residues), 125 bits, see alignment E=5.7e-40 PF01568: Molydop_binding" amino acids 576 to 695 (120 residues), 84.3 bits, see alignment E=9.2e-28

Best Hits

KEGG orthology group: None (inferred from 89% identity to pba:PSEBR_a4398)

Predicted SEED Role

"Formate dehydrogenase-O, major subunit (EC 1.2.1.2)" in subsystem Formate hydrogenase (EC 1.2.1.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.1.2

Use Curated BLAST to search for 1.2.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WDK9 at UniProt or InterPro

Protein Sequence (702 amino acids)

>AO353_04145 dehydrogenase (Pseudomonas fluorescens FW300-N2E3)
MTKTLHHRACHLCEAICGLTIETTATEDAGVQITSIKGDPQDSFSRGHICPKAVALQDIQ
NDPDRLRQPMLRVGSEWQAIAWDEAFALVAERLSAIQERHGQNAVAVYQGNPSVHNYGLM
THSNYFLGLLKTRNRFSATSVDQLPQHLTSHLMYGHGLLLPIPDIDHTDFMLILGGNPLA
SNGSIMTVPDVEKRLKAIRARGGKVVVVDPRRSETAAIADQHIFVRPGGDAALLFGLLNT
VFAEGLSRDSHLPVDGLEEVRQAVASFSAEAMSPLCAVPAEQIRQLARDFASAKTAVCYG
RMGVSTQAFGTLCHWLVQLLNLVTGNLDRVGGALCTEPAVDLVASTSGGHFNRWQSRVSG
RPEYAGELPVSALAEEMLTEGEGQVRALITVAGNPVLSTPNGRQLEQALDGLEFMLSIDL
YINETTRYADLILPSTSALENDHYDTTFNMFAVRNVSRFNRAILPKPDGALHDWEIFVGL
AQAFAAKTGKELKPTMPPAKMIDLGLRAGRFGDASPHKLSVVTLFDHPHGVDLGALQANL
APRLKTANQRVQAAPPAILADLARFAALQAPVADELLMIGRRHVRSNNSWMHNYHRLVKG
KPRHQLLMHPDDLSSRGLSDGQRVRVSSRVGVIEVEVLSSVEMMKGVVSLPHGWGHARPG
VQMTIAMGQPGSSANDLTDERQLDELSGNAALNGVPVTVAAA