Protein Info for AO353_01100 in Pseudomonas fluorescens FW300-N2E3

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 46 to 68 (23 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 140 to 168 (29 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details PF01810: LysE" amino acids 15 to 190 (176 residues), 55.3 bits, see alignment E=3.2e-19

Best Hits

KEGG orthology group: None (inferred from 48% identity to hch:HCH_00192)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WP97 at UniProt or InterPro

Protein Sequence (207 amino acids)

>AO353_01100 lysine transporter LysE (Pseudomonas fluorescens FW300-N2E3)
MQTLDYYSIILFVIATCVTPGPNNVMLMSSGANFGIGRTMRHVAGINIGFPLMLIAVGVG
AGAIFQQYPRLHDVLQVVGALYLLYLAYQIASAPTVDLDDKSGKPLGFTHAALFQWINPK
AWVMAVGAVLTYTSPVDAYGFQILLIALLFFLFGSPCSMVWVFFGQYLRRFLTHPQRLKV
FNITMSLVLVASLIPVLKSLPFGEWWS