Protein Info for ABZR87_RS20375 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 60 to 86 (27 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 212 to 234 (23 residues), see Phobius details amino acids 254 to 285 (32 residues), see Phobius details amino acids 308 to 329 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 166 to 329 (164 residues), 58.3 bits, see alignment E=4.4e-20

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 98% identity to rpi:Rpic_4458)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>ABZR87_RS20375 ABC transporter permease subunit (Ralstonia sp. UNC404CL21Col)
MSTIPQTLEAPAALSNPFADAAERGGAWRTGAVAALAWAAFGLLTWRWPNHVVGFSDWAF
TAELGIAALIVGIALFVVALAAGHVAPLRPVQEALQPAGPWLIAVPAVLALWEVLTAKSG
ALPTPFFAPPQALIEVYSEDWPRLGDSVLNTLKLLGIGYLLGALTGFLVGVSIGWSRAVG
YWVHPVLRILGPLPATALLPITFYFFPSSYSAAAFLIALAAGFPVAVLTWSGVAGVSKSY
YDVARTLGASNAFLVLRVAIPAALPQVFVGLFMGLGASFTVLVTAEMMGVKSGLGWYLTW
AQGWASYVNMYAALIVMALLFSSIITLLFKVRDRALVWQKGTLKW