Protein Info for ABZR87_RS20150 in Ralstonia sp. UNC404CL21Col

Annotation: type VI secretion system membrane subunit TssM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1316 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 435 to 457 (23 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 34 to 561 (528 residues), 470 bits, see alignment E=9.7e-145 PF14331: IcmF-related_N" amino acids 185 to 442 (258 residues), 294.4 bits, see alignment E=1.5e-91 PF06761: IcmF-related" amino acids 489 to 865 (377 residues), 256.6 bits, see alignment E=7.8e-80 PF21070: IcmF_helical" amino acids 1022 to 1109 (88 residues), 35.9 bits, see alignment 1.4e-12 PF06744: IcmF_C" amino acids 1138 to 1241 (104 residues), 97.4 bits, see alignment E=1.1e-31

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 69% identity to bam:Bamb_0393)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1316 amino acids)

>ABZR87_RS20150 type VI secretion system membrane subunit TssM (Ralstonia sp. UNC404CL21Col)
MQRFLNFLTNSRTLSILGVIVLTIFLLLMAQTFEVGLVWVGIALGVLLALWLLTYLWKRW
RARQASNKLEGVLEQAAADKTATPDKREEVEALRVRLAEAVKTIKRSKLGQMSGSAALYE
LPWYIVIGNPAAGKSTAVLNSGLQFPFADKGGAVIQGIGGTRNCDWFFTTEGILLDTAGR
YSVHEEDRREWLGFLDLLKRYRPKAPINGIVVTVSVSELTQNRPEFAINLAKNLRQRVQE
LTERLEVFAPVYVMFTKADLITGFTEFFGDSEKQERDRVWGATLPFEPDSKPDVAAVFDQ
RFDELCDGLKEISVAQIALHRNNKLSPGLLSFPLEFASIKPTLRAFLMTLFDENPFQYKP
VFRGFYFTSALQEGATNSVSAERIARRFGLSTDGAARTREVFSKNGFFLRDLFSKVIFAD
KQTVRQFASPAKTRLRIATFFALVLALGVMLGGWTWSYMGNRTLTANVQADLDKIVKMQQ
NRVDLQARLEALDILQDRIEQLDRYRNDHPLALSLGLYQGDTLQHKLLDEYYNGLRQVML
KPVGGAIETFLAEVNAHPDQLAPMVRPPETGAVMTTSVTTATATVGGVSGASGAAANAPA
APNQATASTGAKRYTDASPTNVEDGYNALKTYLMLSDKRHVEVAHLTDQVTRFWRGWLED
NRGNMPREQMIRSAERNLSFFLARVNDDNWPLLEGNLSLVDQTRENLRRVVRGMPARERA
YAEIKARASTRYAPMTVARIVGDTGAGLVAGSYAVPGTFTKEAWLGYVQPAIKEAANKEL
QTKDWVLNVAARDDLTLEGSPEQIQKALVTMYKTEYAREWQRFMQGVAIQDFSSFDQAVT
GMNLLGDPTNSPIRKVLDTAYEQTSWDNPSMFNAGLKQAKTGVLGWFKQLFARQTPSQVN
VNLEVGGNADAGAIPMGPVGKEFSGLARVVVMRDDKSLLRGYMDSLSKVRTRFNQIKNQG
DPGPGARQLMQQTLDGNGSELADTLKYVDEQMLTGMTDSERATLRPLLVRPLLQSYAVAI
RPATTEVNKVWNAQVYQPFATTLADKYPFAPNAKIEASAAEIGQVFGPDGAIAKFASTTI
GPLSVRRGDMIASRTWGDLGIAFVPEFTTGFTRWIAPLTGGAAGGAGGAAAAAPQTVFQI
LPVPSQGATEYTIEIDGQQLRYRNTPPQWANFVWPNPQGTPGARVTATTFDGRTVELLNE
PGRFGLERLIATAQRKRRPDGAFDLSWTKDNLTVSISLRIISSPQAGGTTASDSPQGQGL
RGLRLPTSIADASAPQNTLTPPAPAAPAGTPPAAQAAVSTQAARHNITEEQGGTAQ