Protein Info for ABZR87_RS19315 in Ralstonia sp. UNC404CL21Col

Annotation: FliI/YscN family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 TIGR01026: ATPase, FliI/YscN family" amino acids 32 to 449 (418 residues), 547.6 bits, see alignment E=1e-168 PF02874: ATP-synt_ab_N" amino acids 40 to 103 (64 residues), 29.1 bits, see alignment E=1.8e-10 PF00006: ATP-synt_ab" amino acids 160 to 369 (210 residues), 276.9 bits, see alignment E=1.7e-86 PF18269: T3SS_ATPase_C" amino acids 376 to 446 (71 residues), 74.9 bits, see alignment E=5.5e-25

Best Hits

Swiss-Prot: 58% identical to HRPB6_XANEU: Probable ATP synthase hrpB6 (hrpB6) from Xanthomonas euvesicatoria

KEGG orthology group: K03224, ATP synthase in type III secretion protein SctN [EC: 3.6.3.14] (inferred from 73% identity to bcm:Bcenmc03_5437)

Predicted SEED Role

"Flagellum-specific ATP synthase FliI" in subsystem Flagellar motility or Flagellum

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>ABZR87_RS19315 FliI/YscN family ATPase (Ralstonia sp. UNC404CL21Col)
MTEPAVSHIIDAGDLERSLRDVLERPDGVGTGVQMRGRIHRAVGLMLNASGIQARLGEVC
ELRTPGERSVYAEVVGFERQSTLLTPLGSVHGLSAATEVIPSGSAHRFGVGDALLGRVLD
GLGAPMDDGGPLFTNERVSTHAEPPSPLSRRRIDAPLSTGVRAIDAMLTVGIGQRLGIFA
PSGVGKSTLLGMIARGAQSDVNVIALIGERGREVREFLELCLPEATRRKTVLVVSTSDRP
AMERVKCALVATAVAEYFRDRGKNVLLLVDSLTRFARAQREVGLASGEPPTRRSFPPSTF
SVLPQLLERAGAGAHGVITAFYTVLVEGDEESDPIAEEVRSIVDGHIVLSRKQALAGRYP
AIDLLASISRVMPQVTTPAHRAAAQRVRELLAKYQEIELLVQIGEYREGSDALGDTALRA
HAALSRFFEQDADVRVKLERTVADLEAVVEAL