Protein Info for ABZR87_RS18705 in Ralstonia sp. UNC404CL21Col

Annotation: TraB/GumN family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01963: TraB_PrgY_gumN" amino acids 68 to 334 (267 residues), 183.2 bits, see alignment E=4.6e-58

Best Hits

KEGG orthology group: K09973, hypothetical protein (inferred from 95% identity to rpi:Rpic_4133)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>ABZR87_RS18705 TraB/GumN family protein (Ralstonia sp. UNC404CL21Col)
MARNHTTWRALAAAFFLLAGGGTAAAQDATPAQAPAPASAPNCPPPASSFIPKDGWAAAA
QRATDHGLLWRIEKNGHTSWLYGTIHVARADWMLPGPTVRSALQQVDSIALELDLLDKDA
DRKPLTAHNSAEDRRLLTGRRGERFNKLLSAACLPDTALTQIRKFQPTMQLASLAVLGVR
TDGLYPDFGIDLFLTTYAKSVHLPIVPLETLAQQVRVLNEIVPKNEVAQQFDTVLDAIES
GEARTQTLTLANAWADSDLSTLEHYPQWCDCLKTASDKRAFQRLVTNRNRAMAENIARVH
NSGQRVFGAVGALHMIGPKGIPALLAARGYKVTPVLPAPEPR