Protein Info for ABZR87_RS13055 in Ralstonia sp. UNC404CL21Col

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 879 transmembrane" amino acids 568 to 594 (27 residues), see Phobius details amino acids 615 to 635 (21 residues), see Phobius details amino acids 641 to 641 (1 residues), see Phobius details amino acids 644 to 665 (22 residues), see Phobius details amino acids 759 to 776 (18 residues), see Phobius details amino acids 796 to 814 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (879 amino acids)

>ABZR87_RS13055 hypothetical protein (Ralstonia sp. UNC404CL21Col)
MSDARRLRLEVVLQAVDKATRPLQRLLNTNKDLARTVKATRDQLKALERAKGLTGQFDGL
RGSIRETVGEMRKARERVERLEQALKNAKAPSGQLAENFKRASATAERLTNKFRTQQTQL
AEVRQKLQQAGRGSMTMAQYQEHLQRATTAATQALAKQDAQLKTHNARARAMAASQQAAE
RMRTHAGNLAAAGAGASVTGAATAAPIWKGLGEAKHYELEKTRMGALGLGDAATKESIEF
AKQMKAYGVSQVDKAELMRDALSTFADAHHAEMVLPTLAKMKFANKAVFGQAQGADNERM
FMDLLKVIELRGGLASEAEFRNQADMVQRVITATGGRVQADEWLNVIKRGGLAAKGMESE
AFYYTLEPLVQEMGGNTVGTAMMSAYQNLYQGKTTKRTLGNLDRFGLIADRSKVKEDKAG
QVSFMDPGALKGADIFRKDQFAWLEQVLLPTLKEKGITEKDQVLDAIGSIFSNRTASNLM
SQMYLQRDQIHKNMRLNKGAAGIDQLDTAAKRLPQGKELEMLAKVHDLQKEIGDKVMPLY
ARALEWVADAADRVTKFMQENPGVAKAMAVGVGVLAATLLTIGPILLTIASVLWPLAKLR
TIMAALTGGAKGGSIVMRLFAGAFNLLMKCAGGLAKALMWVARLALANPLLAVIALIAAG
AIYIWQNWETLGPKLAALWQGIKDAFGRAWDWIKEKASGIADWFTSTKDKLLDAGRAMVD
GLLSGISERWAALKQKVGELADGVATWFKEKLGIHSPSRVFAILGGFTMAGLAQGLEDGQ
NAPLQAVHSLATKLTGIGAGIAIGSTAAVAAPISFDTRPPLTTSAVAAAPAAAAAPITIH
IHPPAGADPQAIARLVRDELRQIENQRAARQRSRLADRD