Protein Info for ABZR87_RS12295 in Ralstonia sp. UNC404CL21Col

Annotation: muconate/chloromuconate family cycloisomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 TIGR02534: muconate and chloromuconate cycloisomerases" amino acids 2 to 369 (368 residues), 591.5 bits, see alignment E=3.2e-182 PF02746: MR_MLE_N" amino acids 5 to 125 (121 residues), 120.3 bits, see alignment E=5.4e-39 PF13378: MR_MLE_C" amino acids 148 to 361 (214 residues), 172.2 bits, see alignment E=1.4e-54

Best Hits

Swiss-Prot: 66% identical to CATB_ACIAD: Muconate cycloisomerase 1 (catB) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K01856, muconate cycloisomerase [EC: 5.5.1.1] (inferred from 97% identity to rpf:Rpic12D_1425)

MetaCyc: 62% identical to muconate cycloisomerase (Pseudomonas reinekei)
Muconate cycloisomerase. [EC: 5.5.1.1]

Predicted SEED Role

"Muconate cycloisomerase (EC 5.5.1.1)" in subsystem Catechol branch of beta-ketoadipate pathway or Muconate lactonizing enzyme family (EC 5.5.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.5.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>ABZR87_RS12295 muconate/chloromuconate family cycloisomerase (Ralstonia sp. UNC404CL21Col)
MIRSIEAILVDVPTIRPHKLSVATMHTQTLVLVQVRCEDGIEGWGEATTIGGLNYGEESP
ESIKVNIDTHIAPLLIGMEARNVAAAMARVRKTIQGNRFAKCALETALLDAQARRLGVPL
SELLGGRLRDALPVAWTLASGDTRKDIAEAEAMLAERRHRIFKLKIGLRPVADDVAHVLA
IKRALGDAVSVRVDVNQAWSELDAANGIAALQAGGVDLIEQPVRAENRAALERLARQFAV
PMMADEALHGPLDAFELACCASADVFAVKIAQSGGLVAAMQVAAIAQLAGIGLYGGTMLE
GAVGTAASAHVFSTFGELQFGTELFGPLLLTQELLTEPLQYRDFMLQVPTRPGLGIDIDQ
DKLARLRRQ