Protein Info for ABZR87_RS11660 in Ralstonia sp. UNC404CL21Col

Annotation: lysophospholipid transporter LplT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 228 to 251 (24 residues), see Phobius details amino acids 263 to 282 (20 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 329 to 352 (24 residues), see Phobius details amino acids 371 to 391 (21 residues), see Phobius details amino acids 396 to 416 (21 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 359 (351 residues), 65.2 bits, see alignment E=2.6e-22

Best Hits

KEGG orthology group: None (inferred from 99% identity to rpi:Rpic_1243)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>ABZR87_RS11660 lysophospholipid transporter LplT (Ralstonia sp. UNC404CL21Col)
MKKGFYTIMAAQFFSSLADNALLIAAIALLTEMHAPQWMTPLLKLFFVLSYVLLAAFVGA
FADSRPKGKVMLITNAIKLVGCGVMLTGLHPLLAYGVVGFGAAAYSPAKYGILTELLPPE
KLVAANGWIEGLTVGSIILGTVLGGALISNHVSAWLLSFDIPGLERIDTPAEAAMLVIMV
IYLIAALFNTRIPDTGARYPQQEKNPVRLISEFADCFNALWRDKLGQISLAVTTLFWGAG
ATLQFIVLKWAEQSLELNLSQGAILQAVVAVGVAAGAMAAAVKIPLRRSLDVLPVGVAMG
AVVMLMAFYTKHTIPEVTFHIGHMKLPLYMMIAYLFLMIVGAMSGFFVVPMNALLQHRGH
VLLSAGHSIAVQNFNENVSVLLMLCLYALLIKLNVSVSVVIVSFGIFVCVTMALVMRRHR
LNEKLFHTAALIGEDKHH