Protein Info for ABZR87_RS10780 in Ralstonia sp. UNC404CL21Col

Annotation: PD-(D/E)XK nuclease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 947 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF12705: PDDEXK_1" amino acids 677 to 931 (255 residues), 114.5 bits, see alignment E=4.2e-37

Best Hits

KEGG orthology group: None (inferred from 95% identity to rpi:Rpic_1033)

Predicted SEED Role

"Helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (947 amino acids)

>ABZR87_RS10780 PD-(D/E)XK nuclease family protein (Ralstonia sp. UNC404CL21Col)
MQTLAFAPGPAFLSRAADAAWRFLDAHAQAAGSATIVVPTAAQIPGVRSALHASAQATGT
PRLLPRILTLGHWLLDLPPEAGLPAARTPLSRLLAVQQALKTQAWLREALGAQDDAALWG
VAQVLVTVSDELSQRWLTLDAAHSGADGRPDELESALAEALERTYAQLSERFLGTESRIV
LTFWRLLSGATDPIPMRLRAMRRLLDELHGPVVWMSPTDAEAVDLDFLQRAAERVPVLSI
GYDWNAPETGTSAAPSTHADFRDLLLHAWPECATAAQAEDDGADAQMPAPILRIAGAARF
EDEAAFAAHTLVDWLNTGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA
AALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGR
LRRLVADRSANKADGEAKVSRLADRVGVLADEAALWRRAGSATLDAWVTLLAGTLDRLHM
RTGLQNDDAGRQLLDWIDRLRTSIHGSTDAGARFSLTEWRALLSMLLESAVFSEPSPPAD
RRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDRAQRFAQQA
RDLAEVLLNQPEVVLSWQRHGGRGEPHRLSGWLERLQRRLAVSGVRIDTSVTLPSLQTTS
QPTDMPAPAAPTLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDELEKRDIGEIL
HAILHRFHRQLLEAPMHDPADRQALLQAISDEQFSPLLAEDGNALRFYRRWLGVMPSYLA
WQAAREADGWRFEAGEVDVDTSITLPDERPLRLRGRIDRIDVHDEHGVAVLDYKTQSQMV
LVRRAKTPFEDCQLPFYGVLDARADSGGWVSLDGEARGDKRDVALPDFTQVVEWLIEQMQ
KDMTALAAGAPLPAFGDESACRYCAARGLCRKGYWTDGAPREPEDAA