Protein Info for ABZR87_RS08050 in Ralstonia sp. UNC404CL21Col

Annotation: AzlC family ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 39 to 108 (70 residues), see Phobius details amino acids 120 to 133 (14 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 179 to 195 (17 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 226 to 244 (19 residues), see Phobius details PF03591: AzlC" amino acids 36 to 175 (140 residues), 101 bits, see alignment E=3.9e-33

Best Hits

KEGG orthology group: None (inferred from 97% identity to rpi:Rpic_0488)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>ABZR87_RS08050 AzlC family ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MALVRWAAALQRRWEAIDPAERAGFFAGVRAYMPSMPPVLTWGLVTGVAMSKSVLTIPQA
IGMTIFVYAGSSQLAVLPLLAAGLPIWTALLTAFIVNVRFIIFSAGLMQHFGHLPFMRRV
VLGVFNGDLPFVLFTQRYPSAAPQAGKEGYYWGMVLLSFVGWQVSSILGIVAASLFPDAW
GLALAGTLALIPVMVSTIRSRATLMAVAVAAVLALVAFKLPYRLSLVIAVTGAMAAGLAA
DEAAARLQWQRRRAAQATADEDDA