Protein Info for ABZR87_RS08035 in Ralstonia sp. UNC404CL21Col

Annotation: nuclear transport factor 2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 PF13474: SnoaL_3" amino acids 12 to 130 (119 residues), 51.4 bits, see alignment E=1.3e-17 PF08332: CaMKII_AD" amino acids 14 to 129 (116 residues), 23 bits, see alignment E=7.7e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpi:Rpic_0485)

Predicted SEED Role

"Alternative dihydrofolate reductase 3" in subsystem Folate Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (146 amino acids)

>ABZR87_RS08035 nuclear transport factor 2 family protein (Ralstonia sp. UNC404CL21Col)
MPRFARLFEAAEDILEAYRDALKRRDADGALKLWLDEDSVSFILPDGQRLHGHEQLRGCL
DALVEKNPVWIECLSQQVHSSLGVSIFEATEALRFSATATEADLYVHTTYVLMQNHEGWR
IAHVHSSQAAEERVAASIASVTHSLH