Protein Info for ABZR87_RS06155 in Ralstonia sp. UNC404CL21Col

Annotation: DUF1254 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF06863: DUF1254" amino acids 83 to 211 (129 residues), 124.8 bits, see alignment E=2.8e-40 PF06742: DUF1214" amino acids 362 to 470 (109 residues), 67 bits, see alignment E=2e-22

Best Hits

KEGG orthology group: None (inferred from 96% identity to rpf:Rpic12D_0102)

Predicted SEED Role

"FIG00976801: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (490 amino acids)

>ABZR87_RS06155 DUF1254 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MTHCPAPARPLTKLAVALSVVASAITLGLTGCSTQNTATTAPIEQRLPQPNEALVRSAYV
YAFPLMMTDALAQTTSALAPAGTFMHQRTLEDETLPTGVRARVDVLASSAFVDLRNGPVV
LSLPDTGRRHIWVALHDGWSDVFESLGNRTTGSRAAHYALTPPGWEGTLPAGVKQIAAPT
SLVWVVARTQVAGARDVAGARRVQDRYRITPLDAFGKTSLREAEAETKVNADKATDLDVS
MEAARRRVTALDANSYFTRFAELLKDNPPHAADSTMLQSLRDLGIVPGAPFDAKAVSAAN
LKVMDGGVAAARETLSLAVKQPPITQNGWFIPRMVGAYGLDYAQRAIVAWNGGGTDLPQD
MLVATAKTDTNGMALDSTHRYVLHFERNQLPPENAGWAIAALSAGGQPRSAAERPSLRNM
LSEADHPRLNRDGSLDILIQRAPPKGMRNNWLPPPTGPFVLRMQLTWPKEAALDGSWLPP
TLQRRDAAAQ