Protein Info for ABZR87_RS05870 in Ralstonia sp. UNC404CL21Col

Annotation: FAD-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 PF00890: FAD_binding_2" amino acids 18 to 48 (31 residues), 22.9 bits, see alignment (E = 1.2e-08) PF01266: DAO" amino acids 18 to 412 (395 residues), 254 bits, see alignment E=8.2e-79 PF01134: GIDA" amino acids 18 to 45 (28 residues), 23.1 bits, see alignment (E = 9e-09) PF13450: NAD_binding_8" amino acids 21 to 48 (28 residues), 26.6 bits, see alignment (E = 1.4e-09)

Best Hits

KEGG orthology group: None (inferred from 82% identity to bgl:bglu_2g09500)

Predicted SEED Role

"D-amino acid dehydrogenase small subunit (EC 1.4.99.1)" in subsystem Pyruvate Alanine Serine Interconversions or Respiratory dehydrogenases 1 (EC 1.4.99.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.4.99.1

Use Curated BLAST to search for 1.4.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>ABZR87_RS05870 FAD-binding oxidoreductase (Ralstonia sp. UNC404CL21Col)
MLRVEEVYDTPGFVGEADVVVIGAGIIGTSAAYELARRGVSVALLDKGIVGAEQSGRNWG
WVRQQNRDIFELPLAMRSVRRWSELRDELQIDLGFRRDGILYASNDAKSIARWEAWCKRA
RDIGFISHVLTSAEVNSRVPAGGPQYAGGVWSPDDGCAEPSRAAPALAEGAKRRGALLYQ
NCAVRGLEFSAGRVSGVWTERGLIKASTVVCAGGAWSSRFCNRHGIDLPAVNVVGTVMRT
SVAPAAINGCFSGPGFALRRRLDGAYTLAVPGFGRIDLAPLGVKHALRYYRNYRNDIGKK
LKYRFSTPWFEGPEAGASWQFDQVSPFERCRVLDPRPDLDFVKVALENVKRAIPQLADLQ
VVHAWAGAIDTTPDLIPIISDVAQVPGFYVATGFSGHGFALGPAAGELVADMVTGAQPMM
DISPYRLGRFSDGTTVKVPEMM