Protein Info for ABZR87_RS05260 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 28 to 44 (17 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 121 to 143 (23 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 324 to 342 (19 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details amino acids 381 to 403 (23 residues), see Phobius details amino acids 415 to 433 (19 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 400 (367 residues), 169 bits, see alignment E=6.9e-54

Best Hits

Swiss-Prot: 48% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 98% identity to rpi:Rpic_3735)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>ABZR87_RS05260 MFS transporter (Ralstonia sp. UNC404CL21Col)
MNTSTATTAALPSHAVSKEDSVYARVSRRIVPLIMLCYVVAYLDRVNVGFAKLQMSQALN
FSETVYGLGAGIFFIGYFLFEVPSNLLMNKIGARIWIARIMITWGLISGAFAFVQTPTQF
YVMRFLLGLAEAGFYPGIILYLTYWYPSHRRARIVAMFMAAIPISGIFGNPLSGWIMSAF
HGAGAGEGWQGWQWMFVIEAIPAVLVGLLVLWKFDDSIRKAKWLSEDEKQILEANIAADN
KGKTEHPGIGKVFSDPRVWMMSLIYFAFVMGQYGLTFWMPTLVKNAGVKDTLMVGVLSAI
PYVCAAITMVLIGRSADARRERRWHLVVPALMGAVGFAVVATAGNNVALSIVFLSLAAAG
VLTCAPLFWSLPTAFLQGTAAAAGIAAINSVGNLAGFVSPYMIGALKDMTGSTSAGMYAL
AGVLVLGCIAVLRTPPKLVNK