Protein Info for ABZR87_RS04410 in Ralstonia sp. UNC404CL21Col

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 83 to 107 (25 residues), see Phobius details amino acids 119 to 137 (19 residues), see Phobius details amino acids 150 to 181 (32 residues), see Phobius details amino acids 193 to 215 (23 residues), see Phobius details amino acids 222 to 245 (24 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details amino acids 285 to 307 (23 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 346 to 365 (20 residues), see Phobius details amino acids 372 to 388 (17 residues), see Phobius details PF02417: Chromate_transp" amino acids 14 to 178 (165 residues), 137.3 bits, see alignment E=2.7e-44 amino acids 218 to 382 (165 residues), 136.1 bits, see alignment E=6.1e-44 TIGR00937: chromate efflux transporter" amino acids 19 to 381 (363 residues), 463.8 bits, see alignment E=3e-143

Best Hits

Swiss-Prot: 89% identical to CHRA1_CUPMC: Chromate transport protein (chrA1) from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)

KEGG orthology group: K07240, chromate transporter (inferred from 97% identity to rpi:Rpic_3574)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>ABZR87_RS04410 chromate transporter (Ralstonia sp. UNC404CL21Col)
MNIALERPTYTLRQLLLYFLRLGALGFGGPVALAGYMRRDLVDARQWITEADYKEGLALA
QLAPGPLAAQLAIYLGYVHYRIVGATLVGIAFVLPSFLMVVALGWAYTRFGGLTWMQSVF
YGVGAAVIGIIAISAHKLTTKSVGKDKLLWAIYLLLAAVTVITESEVAWLFLAAGVLVWF
WRAPPRWLRQGRTNAIAAAPVAAASGMLGTLDWPLLSQLGAFFAKAGAFVFGSGLAIVPF
LYGGVVTEHHWLNEKQFVDAVAVAMITPGPVVITVGFIGYLVAGLPGACVAALGTFLPCY
LFTILPAPYFKKYGKLPSILAFVDGVTAAAVGAITGAVIVLAKRSIVDVPTALLAVATVL
LLVKFKKLPEPVIVAGAALLGLVLYPLLHR