Protein Info for ABZR87_RS03415 in Ralstonia sp. UNC404CL21Col

Annotation: GspH/FimT family pseudopilin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details TIGR01708: type II secretion system protein H" amino acids 19 to 158 (140 residues), 79.6 bits, see alignment E=2.2e-26 PF07963: N_methyl" amino acids 19 to 39 (21 residues), 30.1 bits, see alignment (E = 2.4e-11) TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 19 to 39 (21 residues), 26.7 bits, see alignment (E = 3.6e-10) PF12019: GspH" amino acids 55 to 159 (105 residues), 35.9 bits, see alignment E=9.9e-13

Best Hits

KEGG orthology group: K02457, general secretion pathway protein H (inferred from 93% identity to rpf:Rpic12D_3045)

Predicted SEED Role

"General secretion pathway protein H"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>ABZR87_RS03415 GspH/FimT family pseudopilin (Ralstonia sp. UNC404CL21Col)
MFGPPRRRRHPRGRRGPLGFTLLELLVVVVIIGIVLAVVAVNATPNPRSQLADDAQKLAR
LIELAQEEAQLTSRPVAWEGDAQGWRFYESTPTGWRVLNRDVLAPGHWRQGMDNVQIVAG
AATVPGAPQRLVFGREAIGLPWRVALTSQGARVDVVSDGGPRVLTEAQTQ