Protein Info for ABZR87_RS01065 in Ralstonia sp. UNC404CL21Col

Annotation: DNA repair protein RecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 TIGR00634: DNA repair protein RecN" amino acids 1 to 548 (548 residues), 501.9 bits, see alignment E=1.5e-154 PF02463: SMC_N" amino acids 2 to 504 (503 residues), 69.3 bits, see alignment E=5.1e-23 PF13476: AAA_23" amino acids 4 to 69 (66 residues), 38.4 bits, see alignment E=3.2e-13

Best Hits

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 98% identity to rpf:Rpic12D_2482)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (568 amino acids)

>ABZR87_RS01065 DNA repair protein RecN (Ralstonia sp. UNC404CL21Col)
MLRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDALALTLGERADAAVVREGAP
RADITAEFDVHPHVVAWLEAHELHDDEGVILLRRTVDAAGRSKAFINGAAVTLAQLREVG
EQLVDIHGQHAHQLLLKTDAQRSLLDAHAGLESAVRMVGERYREWHAVVRAREAAEQQSR
EAQLERERIEWQVNELQKLGPQPGEWEEIQAEHHRLSHAASLIEGTRAALDGLSESEGAV
LTQLGATLHTLRELAEIDPALADVLAALEPAEVQIQEAVHTLARYADRAELDPDRLAEVD
ARMQALHTMARKYRVAPETLPAELAERQAQLAALQAASDLDALQAQEAQAHAAYMTVAQS
LSRDRAKAARELADAVTGAMQGLSMAGGRFDIALHALDQGGAAGLEQVEFLVAGHAGVSP
RPLAKVASGGELARISLAISVIASEASPTPTLIFDEVDSGIGGAVAEVVGRRLRELGMRR
QVLCVTHLPQVAALANHHIQVAKQTVAGSTRSDLVVLDATGRVDEIARMLGGASLTDTTR
RHADEMLAAGRAQSAPETSTRKSRRVAQ