Protein Info for ABZR86_RS17265 in Dyella japonica UNC79MFTsu3.2

Annotation: PD40 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07676: PD40" amino acids 87 to 121 (35 residues), 25.4 bits, see alignment 5.2e-10 amino acids 139 to 175 (37 residues), 20.4 bits, see alignment 1.9e-08 amino acids 190 to 217 (28 residues), 21.1 bits, see alignment (E = 1.2e-08) amino acids 239 to 264 (26 residues), 14.7 bits, see alignment (E = 1.2e-06)

Best Hits

KEGG orthology group: None (inferred from 62% identity to ote:Oter_0562)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2HNK6 at UniProt or InterPro

Protein Sequence (297 amino acids)

>ABZR86_RS17265 PD40 domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MKRPLFALFAVLMPVCASAKEAPSTVHPWTPVGISSELFESHPAFDPRTGDLYFVRSSKA
FKGWRILISHCDGKQWSAPVSAPFAAPGAEADPWFTPDGRSIYFISTRATGSMKSKDLDI
WRADRAADGSWQAPVRLPEPVNSGEAEWFPRLAPDGWLYFGSNRAGGLGKNDIWRAKETS
PGHWTVENAGPAINSAGDEYEPLPSPDGKRLIVMADGGLYESHWDGRQWTQKTKLGPEVN
VNGSEIGALFSPSGKSLLFARDTGEPKSGEFFVWQADGAEAWPPMCGQASMSGAARR