Protein Info for ABZR86_RS14310 in Dyella japonica UNC79MFTsu3.2

Annotation: winged helix-turn-helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 transmembrane" amino acids 138 to 156 (19 residues), see Phobius details PF00486: Trans_reg_C" amino acids 26 to 97 (72 residues), 55.7 bits, see alignment E=4.4e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2J6R8 at UniProt or InterPro

Protein Sequence (796 amino acids)

>ABZR86_RS14310 winged helix-turn-helix domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MTTSYRFGEFELDPQARALKQDGVLVDLASSAFDCLVYLVEHRQRPVGKDELIAAVWGST
EISDNLLAQTIVRLRRVFGDTADEQRCIKTLPRVGYRWVMATVTVSDQPHPVAAQGGETG
AAVADVTRQLPSPWHRRWWWGVPLLLLIAIAGYGAWRMHLRAIKAFRQGTAVVLPAQIHA
SDDWSWLRLGLMELIVGDLRGAKVPVEGSRAVVHLLEQSGEHEKEAFESYALVIQPQVTL
DHGRWQIQLEARAADGSTLHAEAFSDNMLKAAHQANAYLLAQIGAGDSDHVATEDAKEQY
LLRMEAASHTGTFAVLRELVEKAPPGLRQSPEFAYARAAFHCSQGEYDACKSELDELLAR
LPEKTRPVLRGRALAQRWYVYSREHKYDEGAQVLGEAIRLLKQQNNTGYLAYAYAQRAEL
LNMVGRYEEAEADFGQSRVNYALAGDTAGALGIDESLAELSMQRGHFAQAIPVIQRAYDQ
YERMGMRQYMPQLLVHLVVAQKLLLQHADAFASTESYWPMEQKFPEFTETVSRHILMFQR
ADALGGIGRSAEASALLEQVLAQIQADPHGEPGLQGTVYTLLARLAWQRGETAAARSWIG
KALAGRLLEWDSDERDTADAWLLDVLIAQQAGDVKEIQRAVPAMQAWAAKLLLADQDDWV
AIQLLRAQAVQAQAEGRREQVLQSLRQAMTMASRYGVPELIADTGLAYSQALLESGKTGE
AFAISGQLSAWGQLDWRVAWAQACVYRAMGQAASAAQYQRKARELAGDRILPAPHPALEA
GAPAAAMMRGTGRGAQ