Protein Info for ABZR86_RS10580 in Dyella japonica UNC79MFTsu3.2

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details amino acids 355 to 383 (29 residues), see Phobius details amino acids 403 to 424 (22 residues), see Phobius details PF12704: MacB_PCD" amino acids 20 to 269 (250 residues), 72.2 bits, see alignment E=7.3e-24 PF02687: FtsX" amino acids 317 to 429 (113 residues), 56.1 bits, see alignment E=3.8e-19

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 64% identity to xal:XALc_2896)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2FHV7 at UniProt or InterPro

Protein Sequence (438 amino acids)

>ABZR86_RS10580 ABC transporter permease (Dyella japonica UNC79MFTsu3.2)
MFGYYLDLALRSLRRNMVLTALMVLAIAVGIGASMTTLTVMHLLSGDPLPGRSDKLFYAQ
VDDNLSAGDYKEPLDKQGYQSTIDLWNARQADRQAIVVESPVKLRAPQTTLPPLMLSMLS
TTADFFPMFDVPFRYGAPWRAEDDASRARVAVISSDLNDKLFGGADSVGRTLRLRDTDVR
IVGVLGRWRPSPQFYTVAGGRFAAGKTADFYSKPQDIFTPFSSALEFNDGNFYQYTCSQP
PATPGHLQNAPCAWLGLWVQLNSPDRAAAYKRFLDGYAAQQQGRILRPQNTRLRSLMEWL
DFQGVVPSDVRLQTWLAFGFLAICLFNTIGLLLAKFLRRGGEIGVRRALGASRGAIFCQC
LVEAGMIGLVGGLGGLLLTLLGLGLVRRQPVAFADMVHLDARMFALTFVLAIVTSLLAGF
LPALRASRVAPGLQLKTL